G62821


Basic Information

Item Value
gene id G62821
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 8277685 ~ 8279994 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU84695
TCCACAGCCAAACTGAAGCATTGTGAGTGAAAGAGTTCCTTTAAGTGATGCACACAAAAGATATTAGAGTTCGTCCTAACCAGCTTTTTCTGCATTGGTTTCATTGGTTAGATATTtggttagttaattagttaagtaGCATAATTATAATGTTAGTTAATTGATTAGTTTGTTAGATATTAGATAGAAGACCCTGTAGTTGGTTTGTTGTTGAGTTGTTGAGCTACCTATTACTTTAGTtaagttaccatatttctttaattttccccaaaatcgttCCTGCACCTTAATCTGGTGTGTCTTTTGTacgaattttaccagtcaggttgtaaggagcagtaaagccactctgctctgaagcagtattagttttagtattagtattactaCCCGCTAAATGagctaagagctagctctttcgccgttcagaggtgagtattatcattaCTATAGCAAGTCGCTAGGTAGATAAGTAGAGTAGCTAAATGAttaagtagttagttagttagttagttagttgcattcagctactttaagttgcattcatttctgacacagatgtgacaaatgcacacacacacttagcctGTCTAATCCCTGTAGAGACTGTACTGCTCTggagtaaataaacatgaacttatcatacctaatgccaggcatgggaCAGAAAAAGCATGCATGATTAAACTGTGGAGCATTAGAACTGTGAAATGATGCatcatcacagttttaattccaTCCGAAGTGGggattttggcagtgtgggatgaggtgaggtgagATTATGAACATCCAACATCCTCACCTCATTAATGCTCTTTTTGCTGAATGCAAACAAAATGTAGTAGAAAGTCTTTTCTGGACAGTAGGACAGTTACTATAACTAAAGCAGATAAAAAACTAGTTTTAATACCCTCAAAATTCAGATGTTTTTGTGCATAAAGTGTAGCTCTGCAGTTAATTTGAGTGATTGCTTGGTTAGCTTGATATCTCTataatggttggttggttgttgggcaGTTGCTAGAtagatacattatatatacatactatatAGTTGTATAGTTAAGTAGAATCCGGGTGAGAATCCATTGAGGTGATTTGCATTTGAACATACACACTTTTGTAAATGTCACaagacacacaaatacacatgcTATGAAAGGTTAGGTGGTTGTATCAGGCTGTTACTAACCTGTCTGATTCTGCCTGCTGTGAGTCTTTCTCTGTTTAAGCTCCCAGTCTCTCCACCGCATCACTGTCTCCTGTCTAAAGAGCCCCCTGATCCACACTAACCCACATACCCCTCCTCCCTACTGCGTGATGTGCTCAGCAGAccttactgctctctctctctccctctctctcccattttcttttttctttctttaaaggaacagttagacaaaaatactttaaatacttaattttccaCTGAAATGCAGTTGATAATGTAGTTATATAGATTTTTAGTTCTttcaattaatattttagtaCCATACTAAAGAAACACACGAAATGTTCCCCTAGTGTGAACTGCACACATTACATCAGAGTTTAAAAATCTTGTAGCAGTGatagtttatttaagtttcCATTACTCAAGTAGCCACAGGGTAAAATACCAATTAAAACCAGTTTAAAGATAAAAGGTGTCTCCCAACAACCATGCAACACCTGATGGACCACCAtcaaaatcccccctccccttTCCTCAGCACTTAAAATGTTTCTCCTTGAGAGAGAAGGAATAAATCAAGCTCCTCTTTTGCTTCAAATCTTAGAAATTGaatgcattcagtgacaagagcatCAAGATTTGTGATGATTACCTCATCATCCGCAACTCATCACTTCAATTTTTGAATAAGGattgaatggagcaccatcttTCCAGAGAACAgagttccacagctcaatgctaggGATTTATGCATTTTATTCTCCATGCCTGGCATTTGGTTTCGCCATCGTTCGCCATggagagtcctattcttttggcaacACTTCTCTACTGgtactagacaagctgtgtatggtgtgtgcatttacacatctgtgtcagcaatggatgcaacCTAAACTACAGTAGCTGAATGGGTTCATTGGAGAGAGTGTCCAGAAAGAATTGGATAGCGATGCATCTTTAGAATCATTGGCATTGACCGATCGGCATAGATTGGGACGATATTTCAAACCAATACTTCCctgacatatttattttatgccaAAAAAGGACCAAGGGGCCCTATTTATTCACAATAATAATGATACACATTAAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU84695 True 2283 lncRNA 0.38 2 8277685 8279994

Neighbor

gene id symbol gene type direction distance location
LOC111192944 NA coding downstream 13936 8253845 ~ 8263749 (-)
LOC103043012 NA coding downstream 24776 8224651 ~ 8252909 (-)
LOC103036167 rassf3,LOC106576047 coding downstream 63611 8175026 ~ 8214074 (-)
LOC103022071 ntf3 coding downstream 287884 7958030 ~ 7989801 (-)
LOC111192943 NA coding downstream 331038 7934150 ~ 7946647 (-)
LOC103036771 LOC103036771,LOC108425308 coding upstream 101503 8381497 ~ 8389275 (-)
cct2 cct2,tcpb coding upstream 109786 8389780 ~ 8400903 (-)
terf2 NA coding upstream 135868 8415862 ~ 8444288 (-)
arfgap3 arfgap3,LOC108279714 coding upstream 167316 8447310 ~ 8462554 (-)
LOC103038884 pacsin2,LOC103038884,LOC108279716 coding upstream 184132 8464126 ~ 8496393 (-)
G62748 NA non-coding downstream 326251 7949835 ~ 7951434 (-)
G62732 NA non-coding downstream 466903 7810553 ~ 7810782 (-)
G62661 tmem209,LOC107583965,LOC107725925,LOC107658886 non-coding downstream 653640 7620926 ~ 7624045 (-)
G62659 NA non-coding downstream 660290 7616957 ~ 7617395 (-)
G62645 arl1 non-coding downstream 724448 7549129 ~ 7553237 (-)
G62832 NA non-coding upstream 52514 8332508 ~ 8333323 (-)
G62858 NA non-coding upstream 153721 8433715 ~ 8434396 (-)
G62907 NA non-coding upstream 366891 8646885 ~ 8647296 (-)
G62950 NA non-coding upstream 740495 9020489 ~ 9020985 (-)
G63034 NA non-coding upstream 1126411 9406405 ~ 9409548 (-)
LOC111192870 zgc:194209,LOC107584030,LOC107658744 other downstream 103869 8166485 ~ 8173816 (-)
LOC103046475 lyrm5a,etfrf1,lyrm5,LOC103046475 other downstream 658253 7617535 ~ 7619432 (-)
LOC111192940 NA other downstream 1418015 6787342 ~ 6859670 (-)
G62484 NA other downstream 1539737 6671610 ~ 6737948 (-)
LOC111192938 NA other downstream 1544560 6727874 ~ 6733125 (-)
G63104 LOC108425317,LOC107562148,LOC107741714,LOC107687569 other upstream 1338667 9618661 ~ 9622788 (-)
G63217 NA other upstream 2034805 10314799 ~ 10411231 (-)
G63516 NA other upstream 4040561 12320555 ~ 12380556 (-)
slc2a13 LOC108427068,LOC108280145,LOC107689243 other upstream 4085474 12365468 ~ 12500663 (-)
LOC103025415 iqsec3,LOC107689235 other upstream 4525977 12805971 ~ 13027498 (-)

Expression


Co-expression Network