LOC103022044


Basic Information

Item Value
gene id LOC103022044
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 9415043 ~ 9418822 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU85013
TCACTTGGAAAAAATATTCCTCTATACAGCTCTattgtaaaatacaatacaaacttCTAAATAAGAAAATTGCTAAATTGCCAGGAGAAAATAAGAGCATTCATATGAACATCTTATGAAGTTTCTTTATGAGTTTTGCCTAAAAAAGTTTTGTGAATCTGGCCCATTGAAAGTGAGAATAGGGGTAATAGAGAACTcatgtacatacatacacaaaaacacactgaaaatacaAGCACAATGACTGCAAATGAATGCTAAAAGCTACAGCTGTTTGGGGTCTGAGCTGCCTGATATACCACCTATACTTAAAGGTTGCAGTAACTGATTCAGTATCAAGTTCAGAAAAGTGATTCAGGCGTTCTTTAGTATTGGACAGTCACTCTTCATTGTGTGAGGCtcctgtttgtctgttttgatCACATcatgtcgtgtgtgtgtgtgtgtgtgtgggcatgcATCAGTTTGTGCGTGAGGGTGCTTCTTCATGCATGATCTTGTCAGCTCTACTCCAGCTGTGTTGTGTTGATGGGAAGAGGAATGCGCTTTACCTCGTGCTGACAGGAACAGTGGGTTGTTCAGTAAGACCAGACAGCAGCTTTACATTTACACCTCTgagatacacagatgCAGTGGACTGTGCAAACTGTACATACAGATAGTACAGACAGTAATCTTACCTCTGGgtcttcctccttcttcttgGTCTTGTGTGCGGGGGAGGGGGCGGGACTAGGCCCCTGTGTGTGGATCTCAGCCGGTGGACCTGAAGAACCCTGAGAGCTGCTGGGGATCTGCGGCTGGATTATTATCACCTGCACACACAagcaaacataaacacacatgagAATGTTTTTATGATCATAGGGTCACACTGGCAATCACCTTTAATCCTTTAGGTCAAGTTACTCCTGACACACTTCTGAAGGCATGGATGGATGCTGTGCTCAGACATTCATGTAGATAATTTATGCTTTCTCAAGAGATGCCGTTATTGAACTGTGATAACACactggaccaacaccagcagatgacatggctccctaaaccatcactgactgtggaaacttcacactagacctcaagcagtttggactgtggtctcttcactcttcctccagactctgctcccttgattttttaaaatgaaatgtaaaatttactgatggtcagtgatggtttggagagtcatgttatttactggtgttggtccactgtgttatccAAAGTCCAAAGTCAATGCATTGTTTCAATCTTAGAGCACTTTTtgcttcactctgctgacaacttttatggagatgcggatttcattttccagcaggactggtattagtctttaatatttaatattcaaattttctgagacactgatttttgtttcacattttgaactgaattactaaaattaaataacttttcaatgatattaaacAATTTTGAGATTCACTAGTGTTTTACAAATCAACATATAAGAGAAGGTATCCTgggaaatgactacacacttAAGGCAAGTAAAGGGTCAACCACAAACCCAGTGCACGAACAGATGGCAAACTCTAATGGTCAACTCACTGTGTTGACTCAAACAGTAAATCTTAATTGAATTAATTCACCATTTCAAATCCacaacttcattttttttatatttaagatatgTTCATTGATTCAATTACATGTAGTCCTGTTAagttttacagtaaacaaaGTGGACAAAGTTCTAGCTGTACACAAGTCTGAAATCACACACAAGTTTAAGAACATGTCTCTCCACATTGGCACCTGCACAATCAGCAGTGAAT
>XR_002650189.1
ttaaaatggttcatatgtttatttggagcttACCTTCCAAGTGTTCTGTGGTGACAAGGCCGAGGGCTACCATGAAGGCAATTTTCTTAAGACCAGACAGCAGCTTTACATTTACACCTCTgagatacacagatgCAGTGGACTGTGCAAACTGTACATACAGATAGTACAGACAGTAATCTTACCTCTGGgtcttcctccttcttcttgG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU85013 True 1799 lncRNA 0.39 3 9415043 9418822
XR_002650189.1 False 211 lncRNA 0.43 3 9416136 9417083

Neighbor

gene id symbol gene type direction distance location
nup50 nup50,LOC107699201,LOC107719874,LOC107562145,LOC107601009 coding downstream 148164 9252337 ~ 9266879 (-)
LOC103042700 LOC108425355,LOC108279935 coding downstream 187795 9223714 ~ 9227248 (-)
LOC103045460 NA coding downstream 222478 9170991 ~ 9192565 (-)
LOC103042080 LOC108425318 coding downstream 824727 8587268 ~ 8590316 (-)
LOC103041774 NA coding downstream 861478 8542470 ~ 8553565 (-)
arhgap8 arhgap8 coding upstream 16292 9435114 ~ 9459694 (-)
fbln1 NA coding upstream 432108 9850930 ~ 9864019 (-)
LOC103036113 LOC108279889 coding upstream 446538 9865360 ~ 9887488 (-)
LOC103042295 LOC108425305,LOC105896948,LOC105020256,LOC108279434,LOC105913407 coding upstream 567482 9986304 ~ 10032671 (-)
creld2 creld2 coding upstream 976108 10394930 ~ 10405872 (-)
G63034 NA non-coding downstream 5495 9406405 ~ 9409548 (-)
G62950 NA non-coding downstream 394058 9020489 ~ 9020985 (-)
G62907 NA non-coding downstream 767747 8646885 ~ 8647296 (-)
G62858 NA non-coding downstream 980647 8433715 ~ 8434396 (-)
G62832 NA non-coding downstream 1081720 8332508 ~ 8333323 (-)
G63041 NA non-coding upstream 63378 9482200 ~ 9482517 (-)
G63042 NA non-coding upstream 67200 9486022 ~ 9486233 (-)
G63105 NA non-coding upstream 218866 9637688 ~ 9642240 (-)
G63107 NA non-coding upstream 228730 9647552 ~ 9650188 (-)
G63125 NA non-coding upstream 472194 9891016 ~ 9891758 (-)
LOC111192870 zgc:194209,LOC107584030,LOC107658744 other downstream 1241227 8166485 ~ 8173816 (-)
LOC103046475 lyrm5a,etfrf1,lyrm5,LOC103046475 other downstream 1795611 7617535 ~ 7619432 (-)
LOC111192940 NA other downstream 2555373 6787342 ~ 6859670 (-)
G62484 NA other downstream 2677095 6671610 ~ 6737948 (-)
G63104 LOC108425317,LOC107562148,LOC107741714,LOC107687569 other upstream 199839 9618661 ~ 9622788 (-)
G63217 NA other upstream 895977 10314799 ~ 10411231 (-)
G63516 NA other upstream 2901733 12320555 ~ 12380556 (-)
slc2a13 LOC108427068,LOC108280145,LOC107689243 other upstream 2946646 12365468 ~ 12500663 (-)
LOC103025415 iqsec3,LOC107689235 other upstream 3387149 12805971 ~ 13027498 (-)

Expression


Co-expression Network