G63171


Basic Information

Item Value
gene id G63171
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 10077679 ~ 10077995 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU85238
TGTCAGGTGCAGGAACAGGGAGAGGACGCAGAGGCGGACGCAAGTGCGAGTTACATTTATTAACatacataaaagaaaaacaagaaacagatcAGAGAAAACACGGGGATCACGAAACCTGACTGACGTCAACAACGCACAATCACGGACGAAGGTAACCAGTAGAGGGGGACTATTTATACCAACGGACACAGActagaaacaggaaacacctgggaagagagggcggagctacaaaacAGGTAGGCCACAGGGGAGGAGACACAGGATAAACACAAggagagtaaataaacaaacgaaatacaTGAAATCGTGAC

Function

GO:

id name namespace
GO:0017040 N-acylsphingosine amidohydrolase activity molecular_function

KEGG:

id description
ko00600 Sphingolipid metabolism

RNA

RNA id representative length rna type GC content exon number start site end site
TU85238 True 317 lncRNA 0.46 1 10077679 10077995

Neighbor

gene id symbol gene type direction distance location
LOC103042295 LOC108425305,LOC105896948,LOC105020256,LOC108279434,LOC105913407 coding downstream 45008 9986304 ~ 10032671 (-)
LOC103036113 LOC108279889 coding downstream 190191 9865360 ~ 9887488 (-)
fbln1 NA coding downstream 213660 9850930 ~ 9864019 (-)
arhgap8 arhgap8 coding downstream 617985 9435114 ~ 9459694 (-)
nup50 nup50,LOC107699201,LOC107719874,LOC107562145,LOC107601009 coding downstream 810800 9252337 ~ 9266879 (-)
creld2 creld2 coding upstream 316935 10394930 ~ 10405872 (-)
zbed4 zbed4,LOC107735570 coding upstream 346594 10424589 ~ 10433454 (-)
LOC103026034 gramd4,gramd4a,LOC108427081,LOC107721158 coding upstream 1646472 11724467 ~ 11779849 (-)
LOC111192951 LOC108427081 coding upstream 1702560 11780555 ~ 11805577 (-)
LOC103026753 LOC108427079 coding upstream 1746851 11824846 ~ 11965807 (-)
G63170 NA non-coding downstream 3202 10074229 ~ 10074477 (-)
G63169 NA non-coding downstream 3542 10073558 ~ 10074137 (-)
G63136 NA non-coding downstream 161057 9914565 ~ 9916622 (-)
G63131 kdm5a non-coding downstream 168431 9907553 ~ 9909248 (-)
G63125 NA non-coding downstream 185921 9891016 ~ 9891758 (-)
G63175 NA non-coding upstream 18104 10096099 ~ 10096842 (-)
G63183 NA non-coding upstream 56201 10134196 ~ 10135349 (-)
G63189 NA non-coding upstream 109177 10187172 ~ 10187427 (-)
G63190 NA non-coding upstream 116581 10194576 ~ 10194786 (-)
G63219 pim3 non-coding upstream 234763 10312758 ~ 10314633 (-)
G63104 LOC108425317,LOC107562148,LOC107741714,LOC107687569 other downstream 454891 9618661 ~ 9622788 (-)
LOC111192870 zgc:194209,LOC107584030,LOC107658744 other downstream 1903863 8166485 ~ 8173816 (-)
LOC103046475 lyrm5a,etfrf1,lyrm5,LOC103046475 other downstream 2458247 7617535 ~ 7619432 (-)
LOC111192940 NA other downstream 3218009 6787342 ~ 6859670 (-)
LOC111192938 NA other downstream 3344554 6727874 ~ 6733125 (-)
G63217 NA other upstream 236804 10314799 ~ 10411231 (-)
G63516 NA other upstream 2242560 12320555 ~ 12380556 (-)
slc2a13 LOC108427068,LOC108280145,LOC107689243 other upstream 2287473 12365468 ~ 12500663 (-)
LOC103025415 iqsec3,LOC107689235 other upstream 2727976 12805971 ~ 13027498 (-)
prkcq prkcq,LOC107748461,LOC107675981,LOC107555829 other upstream 3763198 13841193 ~ 13887868 (-)

Expression


Co-expression Network