G63328


Basic Information

Item Value
gene id G63328
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 11986998 ~ 11990396 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU85449
TATCCAGGTGATgacagaagaaccacttttgctTTTTTAGAGAATCtttctgaatatatatattttttaagaaacccAAAATAATTAATCTGTGGTATCCCTCCAGAAGacctttctctccctttttaaagagtgtgtgtccTGTTAGTGTCCCCTAAGCTATACAACTTCCTTAGCGGCCATTCTGAGAACAGCAGCATCCAGAACAGTTCCACACTTCTCCTCCTGCGGGGTGACTTTGTAAAGCTTTTTAATCTTGGCCATATCACTGAGAGTGGAAATCTGATCAGCTGGAATCTGCTGGCCATCCACCTTAGACGTGACATCATCCTTATTGAAAATGTCCTCTTTATTATGAACGAGGACAACAAGGACGGCGCTGTCACTGTCTGAGACTCCAAACCTCCTAAATGCCTCAGagatGTTGTTGGTGGGTGAGAGACTAAAGATGATCTCAGAGTACAAACTCCTCGTCTTCATTTTCCCAACCTTCTGTAAATGAACTGCCTTATTTGCTGCTACCAGAGTCTGGAACAGGTCCACAACCATGCTGGGGTTAATCAGAGCTCCGGTATCTGTCCCTCCATTGCCATCTTTCTCAGCTCTGCGCAGTTTTTCACATCTCTGAACAGCAGCTGAGTGACTGACTGATCGGGGAAGAGCTCTAAATCCTGAGTTAACTGCATCTCCagccttaaataaaataaaaacactcctGGTTTACCAAACTAACCAAACTACAGCTAGCTAACCCTAGCTTACTACACGAGTGCACGAGACCAg

Function

NR:

description
Tc1-like transporase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU85449 True 783 lncRNA 0.44 4 11986998 11990396

Neighbor

gene id symbol gene type direction distance location
LOC103028484 srr,LOC108427077,LOC108279919,LOC106575990 coding upstream 214 11980371 ~ 11986784 (+)
brd1 brd1 coding upstream 1522280 10440014 ~ 10464718 (+)
alg12 alg12 coding upstream 1566189 10409021 ~ 10420809 (+)
pim3 pim3 coding upstream 1670577 10310441 ~ 10316421 (+)
il17rel NA coding upstream 1916116 10042203 ~ 10070882 (+)
alg10 LOC108427075 coding downstream 204 11990600 ~ 11997857 (+)
c7h12orf40 NA coding downstream 370788 12361184 ~ 12373369 (+)
LOC103032294 NA coding downstream 520492 12510888 ~ 12556587 (+)
LOC103032798 NA coding downstream 568264 12558660 ~ 12595497 (+)
LOC103033113 LOC108427023 coding downstream 613714 12604110 ~ 12626928 (+)
G63303 NA non-coding upstream 11445 11956885 ~ 11975553 (+)
G63285 NA non-coding upstream 175408 11811156 ~ 11811590 (+)
G63269 NA non-coding upstream 268456 11718022 ~ 11718542 (+)
G63268 NA non-coding upstream 285292 11701418 ~ 11701706 (+)
G63260 NA non-coding upstream 351452 11630642 ~ 11635546 (+)
G63329 NA non-coding downstream 16889 12007285 ~ 12007519 (+)
G63410 NA non-coding downstream 386750 12377146 ~ 12378927 (+)
LOC111192954 NA non-coding downstream 698923 12689319 ~ 12696748 (+)
G63460 NA non-coding downstream 708652 12699048 ~ 12746828 (+)
G63465 NA non-coding downstream 817471 12807867 ~ 12811899 (+)
G63051 NA other upstream 2336911 9646579 ~ 9650087 (+)
LOC111192948 NA other upstream 2546434 9431499 ~ 9440564 (+)
LOC103041471 slc37a3,LOC106609230,LOC106576065,LOC107719875,LOC107758206,LOC107601005,LOC107562143 other upstream 3446875 8526218 ~ 8540123 (+)
rab19 rab19,LOC108425368,LOC106523538 other upstream 3571959 8401840 ~ 8415039 (+)
G62455 gpr85,LOC106576049,LOC107580073 other upstream 5131236 6851230 ~ 6855762 (+)
G63432 NA other downstream 477654 12468050 ~ 12468902 (+)
LOC111192955 NA other downstream 1165830 13156226 ~ 13161367 (+)
gata3 gata3,LOC107555822 other downstream 2176833 14167229 ~ 14242234 (+)
G64015 NA other downstream 2754339 14744735 ~ 14745082 (+)
arid2 arid2,LOC107707985,LOC107555896 other downstream 4404930 16395326 ~ 16426623 (+)

Expression


Co-expression Network