G63460


Basic Information

Item Value
gene id G63460
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 12699048 ~ 12746828 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU85623
tacatTATATactgcaagaaaaaaaataaatattacatacaaTGTAATATTGCACACGCCTAagtgagatatttaaaaatacaagaattttatcagatttgtaacagaagtcagtgatccaaaatgtcatgatagtaattataatgcacttcaaatatctccatatatccaggattaaagtaaaataaatgatactggacagatttaatctgtctctagtagatatataatgggaaatgggatgggtgacatggcacgatattttaagGTATTATATCGTTCACGATGTTTAAAAATTTTGACGATATTTTTGTGTATGATACTATATGGTACATCCCTATCTATTTGGAAGAAGAATGGTCTGATATGCAAAAAGAATGAATATTTTTGAATTGCAAGTTGCGAGTTCAATTCCACTCCTTGTAATTccaatttaaattcaattttacATCATGTAGGGTTCAAATATAAATTCAAATTCaataaattgaattattttctgaaattaagtaaattcTAAATTTTGAACAGCCCTAATGTACAGTAAGCACACAGTATCAGATGTTGGTATTTGAAGCCTTGTTTGCGATTATGAATATGAGTAAGTAAGCATGGTATTAGATAGATATCAAAAACCCGTATCAGTATTCAACCAGGTACTTTTCATGCAATAACAGcactcaaaaaaaaacttttcagcCAATCTCATTGCAGGCAGAGCCATATCTAACTGTGGTATAGTATTCACTATAGAAAAAGACAAACTAAGATCTGAGTCTGAGGTTAAATTCTATGGATGAGTGTAAACTGGCTCGTTGGTAAGCATAAGGCTTATGTTGGccattttatttcttgttttatctTCTTTGTAACGTAAATTTgtaaggttttttaatttttattctgtCCTTCTGCTGTTGCTTCTCCACACCAGCTCCAGATAATACAACTCAGAGAAGTGTCTGAATGTGCTGATAATACGGGTATCAGTGAGTCAGCCACAGCGACTGTGATGATGTGTTGATTTCCTCTCCTGAGACAGTTCAATAATCACatgttaaattaacattgaACAACACAGTTTGTTGTCTGAGCCAAGATTGAGTACAGcttattacattcatttttagaTAGCTAGTGTTGTAATAGGAAGTATCCATACCCAATACTAGTTACCCAGATAACTAGAGCATGTGGGGTCTGTATGGGTAGCTCAGCTGGgcttaaaaaagtttttatttgttttattttttgacagTTTCCAGGTTTGCTTATCGTATGGGTGTCAGTGTTATGCTATATGGGGGTCAGTGATGGATGGACCAGGAGGATGTATTGTAATATTcaatgatttttgtgttttgtggattatcttttattacaaatatattttcatgTTCAGTTAT

Function

GO:

id name namespace
GO:0038024 cargo receptor activity molecular_function
GO:0005044 scavenger receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU85623 True 1406 lncRNA 0.33 2 12699048 12746828

Neighbor

gene id symbol gene type direction distance location
pyroxd1 pyroxd1,LOC107584714,LOC107597005 coding upstream 18021 12667180 ~ 12681027 (+)
trnag-gcc_1 NA coding upstream 39530 12659448 ~ 12659518 (+)
iapp iapp coding upstream 40402 12653022 ~ 12658646 (+)
LOC103023853 NA coding upstream 48949 12633279 ~ 12650099 (+)
LOC103033113 LOC108427023 coding upstream 72120 12604110 ~ 12626928 (+)
LOC103034184 LOC108427058,LOC108279609,LOC107689715,LOC107584717,LOC107748475,LOC107597007,LOC100708075,LOC102305399,LOC102790409 coding downstream 21010 12767838 ~ 12803571 (+)
LOC103034836 NA coding downstream 463394 13210222 ~ 13242742 (+)
st8sia1 st8sia1,LOC107755164,LOC107748471,LOC107567669,LOC108279455,LOC108279490 coding downstream 524349 13271177 ~ 13303112 (+)
LOC103036201 NA coding downstream 622852 13369680 ~ 13381915 (+)
LOC103026035 NA coding downstream 639710 13386538 ~ 13396263 (+)
LOC111192954 NA non-coding upstream 2300 12689319 ~ 12696748 (+)
G63410 NA non-coding upstream 320121 12377146 ~ 12378927 (+)
G63329 NA non-coding upstream 691529 12007285 ~ 12007519 (+)
G63328 NA non-coding upstream 708652 11986998 ~ 11990396 (+)
G63303 NA non-coding upstream 723495 11956885 ~ 11975553 (+)
G63465 NA non-coding downstream 61039 12807867 ~ 12811899 (+)
G63488 NA non-coding downstream 411497 13158325 ~ 13163098 (+)
G63490 NA non-coding downstream 423974 13170802 ~ 13193768 (+)
LOC111192873 NA non-coding downstream 424868 13171696 ~ 13172427 (+)
G63493 NA non-coding downstream 426565 13173393 ~ 13198835 (+)
G63432 NA other upstream 230146 12468050 ~ 12468902 (+)
G63051 NA other upstream 3048961 9646579 ~ 9650087 (+)
LOC111192948 NA other upstream 3258484 9431499 ~ 9440564 (+)
LOC103041471 slc37a3,LOC106609230,LOC106576065,LOC107719875,LOC107758206,LOC107601005,LOC107562143 other upstream 4158925 8526218 ~ 8540123 (+)
rab19 rab19,LOC108425368,LOC106523538 other upstream 4284009 8401840 ~ 8415039 (+)
LOC111192955 NA other downstream 409398 13156226 ~ 13161367 (+)
gata3 gata3,LOC107555822 other downstream 1420401 14167229 ~ 14242234 (+)
G64015 NA other downstream 1997907 14744735 ~ 14745082 (+)
arid2 arid2,LOC107707985,LOC107555896 other downstream 3648498 16395326 ~ 16426623 (+)
G64289 NA other downstream 3692392 16439220 ~ 16442449 (+)

Expression


Co-expression Network