LOC111192955


Basic Information

Item Value
gene id LOC111192955
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 13156226 ~ 13161367 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU85654
aaaaaatgtgcctgtttaaaaagttttttttcttttgtcctCCCAGGATGAGaacagtattttgtttatatgtgACCtgcactttaattttcccacatCGATAATTCACACGATACGTAAACACACCGTGCGGGGGAAAATGGTGTTCGCTCCAGTTGTGATGAGACTGGACTGTGGATCCACAGCTCAAGCTCCTACAGGTTTTTGGGAACTTTCAGGCTACGGTCCTTTAGGAATCTATAAATCCGACATGAAGAGGATCGGAGGCATGAACACTATAGAGTTTAAGGATAAGTGGGGAGGAGAGGACTGGGAGTTGTTAGACAGGATCCTGAGCAACAAGCTGGAGGTGGAGCGACTGAACCTCAGGAATTTCCTACATTTTCACCACTCAAAGCGAGGAATGTGGAATAACTAACAGCACCACAGAACTCAAGGACTACTTTATGAACTTTTATGAACTTTTTTACTTCATGCTCAAAGAAGTGGACTTGATTATCCATGAATCAGTAATGGATTATGGAATGATTTTCTGTTGGTTTGTGAAGGCCAATAGTG
>XM_022671363.1
aaagttttttttcttttgtcctCCCAGGATGAGaacagtattttgtttatatgtgACCtgcactttaattttcccacatCGATAATTCACACGATACGTAAACACACCGTGCGGGGGAAAATGGTGTTCGCTCCAGTTGTGATGAGACTGGACTGTGGATCCACAGCTCAAGCTCCTACAGGTTTTTGGGAACTTTCAGGCTACGGTCCTTTAGGAATCTATAAATCCGACATGAAGAGGATCGGAGGCATGAACACTATAGAGTTTAAGGATAAGTGGGGAGGAGAGGACTGGGAGTTGTTAGACAGGATCCTGAGCAACAAGCTGGAGGTGGAGCGACTGAACCTCAGGAATTTCCTACATTTTCACCACTCAAAGCGAGGAATGTGGAATAACTAACAGCACCACAGAACTCAAGGACTACTTTATGAACTTTTATGAACTTTTTTACTTCATGCTCAAAGAAGTGGACTTGATTATCCATGAATCAGTAATGGATTATGGAATGATTTTCTGTTGGTTTGTGAAGGCCAATAGTGTTGATTTGCTTTTAAAGTAAAAGCACcaaatattgttgttgttttta

Function

GO:

id name namespace
GO:0032580 Golgi cisterna membrane cellular_component
GO:0016758 transferase activity, transferring hexosyl groups molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU85654 False 558 TUCP 0.42 3 13156226 13161320
XM_022671363.1 True 586 mRNA 0.41 3 13156245 13161367

Neighbor

gene id symbol gene type direction distance location
LOC103034184 LOC108427058,LOC108279609,LOC107689715,LOC107584717,LOC107748475,LOC107597007,LOC100708075,LOC102305399,LOC102790409 coding upstream 352655 12767838 ~ 12803571 (+)
LOC103025111 LOC108427059 coding upstream 412615 12701140 ~ 12743611 (+)
pyroxd1 pyroxd1,LOC107584714,LOC107597005 coding upstream 475199 12667180 ~ 12681027 (+)
trnag-gcc_1 NA coding upstream 496708 12659448 ~ 12659518 (+)
iapp iapp coding upstream 497580 12653022 ~ 12658646 (+)
LOC103034836 NA coding downstream 48855 13210222 ~ 13242742 (+)
st8sia1 st8sia1,LOC107755164,LOC107748471,LOC107567669,LOC108279455,LOC108279490 coding downstream 109810 13271177 ~ 13303112 (+)
LOC103036201 NA coding downstream 208313 13369680 ~ 13381915 (+)
LOC103026035 NA coding downstream 225171 13386538 ~ 13396263 (+)
usp44 usp44,LOC107755158,LOC107748469,LOC107667716,LOC107597009 coding downstream 272202 13433569 ~ 13445672 (+)
G63465 NA non-coding upstream 344327 12807867 ~ 12811899 (+)
G63460 NA non-coding upstream 409398 12699048 ~ 12746828 (+)
LOC111192954 NA non-coding upstream 459478 12689319 ~ 12696748 (+)
G63410 NA non-coding upstream 777299 12377146 ~ 12378927 (+)
G63329 NA non-coding upstream 1148707 12007285 ~ 12007519 (+)
G63490 NA non-coding downstream 9435 13170802 ~ 13193768 (+)
LOC111192873 NA non-coding downstream 10329 13171696 ~ 13172427 (+)
G63493 NA non-coding downstream 12026 13173393 ~ 13198835 (+)
G63510 NA non-coding downstream 96534 13257901 ~ 13311171 (+)
G63514 NA non-coding downstream 163933 13325300 ~ 13325508 (+)
G63432 NA other upstream 687324 12468050 ~ 12468902 (+)
G63051 NA other upstream 3506139 9646579 ~ 9650087 (+)
LOC111192948 NA other upstream 3715662 9431499 ~ 9440564 (+)
LOC103041471 slc37a3,LOC106609230,LOC106576065,LOC107719875,LOC107758206,LOC107601005,LOC107562143 other upstream 4616103 8526218 ~ 8540123 (+)
rab19 rab19,LOC108425368,LOC106523538 other upstream 4741187 8401840 ~ 8415039 (+)
gata3 gata3,LOC107555822 other downstream 1005862 14167229 ~ 14242234 (+)
G64015 NA other downstream 1583368 14744735 ~ 14745082 (+)
arid2 arid2,LOC107707985,LOC107555896 other downstream 3233959 16395326 ~ 16426623 (+)
G64289 NA other downstream 3277853 16439220 ~ 16442449 (+)
G64431 NA other downstream 3591676 16753043 ~ 16753560 (+)

Expression


Co-expression Network