G63607


Basic Information

Item Value
gene id G63607
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 12800465 ~ 12803555 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU85825
cTTTATTGTGAACACCGGCTATAAACACTTGCAGCTCACGTCACAACTATGCAATATATCTTTAGGGTTAATCAGCCTTTagaatatatacacaattataTTCAGCACTCCATAGCTTATATTACATTCTGTACAACATTTACTGTCTTTCAGTATCAATCTTCAGCACACTGTATTGCATTAAGTGTAGGTCAGAAAGCTTTCTTGTTACTATGAGCGAAGGTGGTGTTTATTCAGGCACACAACAACCATACCTGATGGTTCAGAGGATCATACAAGGTTTCTCAgatagattttttgttttaaactatTGCTTGAGTGGACAAACTGTAtagaacattttattatattaatgagACATccactttaaaatgttaagCTGCACACATAATTGCTCCTGTATAAATGGAAGTgatttttaaactgattttctttagtttaaatggaagacaatgtaaaatagtttatacaagtaattttggagcatttctattggttcatttttGATGAAATTGTGACATCTTTTACCAAAACGTTGAAAATGGCTAAAACATGGATTTAAGGTTTTTATGGGTCAGCAACAATATATACACATCAGCCATATTGTATATAGGTGTTCTTAAAGTGGATGTgttaaagctgtaaaaataGGCAAGTAATGCCTAGACAACTGTACAAGTTGTGTATGATGCTTTGAGGAACCGTCAGATGAAAGCTTTTAGAAGAAAAATGCTTGACTGAAATACTTGAATGTTCCTCATAGCACATTAAGGGCTTCTTCCAAGGTTTAAAGTTTAACAAcctcaaaaatgtttttcaacaGTTGAGACTGTGTTGCGGGTTTGCCAAACCACCATAGGGTGCTCTCTAGTGAGTCCAAAATAAAAGGGTTCATAGTTGATAAAgaaactgaaatatattttaaaaataactcaacacagaaaaatatcaaatgttttagtattttagaCATCTATTTTTTACAtccttttaaactcagcaaccagtcagctcacagtagcagtaatgctagcacCCTTACTGCCTAAAACCTTTTTGTTGtagaacaaattaaaatatacaggTTTTATctgataaaaatactttatcaTACTTTCTTAAATTTTCTAAAAAGAATGATCCTGGACAAACAGTTtagtcctttttttattttgatttgctCCATTCACCCCTATTCTTTGAGGACTCACTCATGGGCTCCCTCTAGCATTAAACAGACATTTTCTGATTTGTAACAGAGGAACAGGAAGTGGACAGGCTCTCTATAAACAGCTTTTTCTATTTTAGAAGATACACTGGTTGGACATggggttctctctctctctatacaatCCAATTGACTGTAGCTAGACGCTGTTCTTGACTCACGACCGCCAACTGGTCgagatattaaacctgctagatgtTTGCAGATTGCTGTGACTTATTGTGAACTGCTGTATCTTCCAGCAGTTCACAATACACAacaaaaactgaactaaactcaTGTAGAATGAACTAGGCATAATGAGAATGAGTGTCCAAAGCTCACTGATGCTTATGGAGGTCCCATCTCACAAGTTACCTGATTTGAGGTCAGTGGTTAGTTCTGTTTTGCTGTATGTAAAAGAtacatatactttttttttttttttttgcattttagacCTTATATAATTtccacatttaaaatcctttaattatcCCAAAAAGTAAGTGCACcttatacactctaaaaagtgattttgtgttttagtcaggagaactaatattatcaagttaaGTGAACTAACCGGCCAgcacaactcaataaaatgagttcagagaacttcaatctgaaaacttgaaaatatggGGGGTAGAACCAATGaacTTCTAGTATAATACcctgtcaatgtttttttacagtgctggtacatacagctttcccatcaGGCTCCTGGCACTGTATATTTGCAttttgggtgtggcctctcccttactttaccatctttgtgttgtctgttgcccaaagctaccttatcctgggcatgCATTAGTGTAACATAtgtgttgattgccaggcctcagtgtttgtagcctttgttctgtgttcctagtgatcacagtatgttgGCTTAGAGCTACAAAGTTCACTCTTGTGCTGCCCCAGTgttggggcaaaatatgctaAACATGTTGAAAATgcctatatatattaaataaactacattattTAAGCCCACAGTACTTGAGTTGAgccagtaaatatattttttcagtgtaatctggtgtgccttatgtttgaattttaccagtcagctctagctctttcgccattcagccTGTATCCTAGTGCTCtccacagctagcactgctggagcagaattagcatgctagctcttttgccgttcagaggtacagtaagtattatcggcctgtagcctgctttaTAGTGTTAAAACCAGCTACATGGAAATATAGAtgagaaaaatagaatattatatatagctTGCCTCCTTTGCAACAGTTGCATTGAAAGTACACATCATTGGGTAGTTTTCTGTGCCTGTTTACGTTCCAAATTTCATGCAGTCTATTAGTATTTGTCGGGGCTATAATCCATAGACACATTCATAACGTGCTTTGAAGAGTCTTTGAAGTTGTTGTCCAGAAAGACAAACACTCCAAATATACCACGCTTACAAAAAAGGGGGAAAGCTTGAAGAACTCCACTCCAATACGTCTACAGCTTACAACGGCAttccacacactgctttttacattcaTACTAAACACAAGACTCCTCCCAATGTGAGTCCTGCTGAGTCCCGCAGATGCTTTATACTGGAGGAGACTGGGAAATGGACGAGTGTGACTCCAGCTCTCTCCAGTTGGTGCTGTGTCATTGGCCAGGGTTCTTTCTTTAGTTTATCAAACATCCCCTCTGCTCTCAGAACGATGGTGTATCATCAGAAGGAAGCTTCAGCAATGATCGTTTGATGTCCCAGGATGTCCTTGTCCCCTGAAGTGTTGACCTCGTCAGTGGGCGTGGTCATTTTGTGCCAGCG

Function

GO:

id name namespace
GO:0005198 structural molecule activity molecular_function
GO:0005212 structural constituent of eye lens molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU85825 True 3050 lncRNA 0.37 3 12800465 12803555

Neighbor

gene id symbol gene type direction distance location
LOC103024791 parp11,LOC108280019,LOC107726831,LOC107597042,LOC107689238,LOC105020367,LOC102790985,LOC107748476 coding downstream 100983 12691590 ~ 12699482 (-)
LOC103033667 NA coding downstream 111430 12684226 ~ 12689035 (-)
LOC103029428 abcd2,LOC108427069,LOC107689723,LOC107566844,LOC107689245,LOC106575983 coding downstream 440724 12330033 ~ 12359741 (-)
LOC103029962 LOC108427070,LOC108279892 coding downstream 480140 12255305 ~ 12320325 (-)
LOC103023221 cpne8,LOC108427072,LOC108279828,LOC104935575 coding downstream 553906 12029314 ~ 12246559 (-)
LOC103034510 tnni1d,LOC108280151,LOC108427054,LOC107597014,LOC103374597 coding upstream 446097 13249652 ~ 13260256 (-)
scyl2 scyl2,si:ch211-244b2.1,LOC107755162 coding upstream 592930 13396485 ~ 13422065 (-)
depdc4 LOC108427048 coding upstream 620083 13423638 ~ 13432932 (-)
LOC103026355 metap2,metap2a,LOC107755160,LOC107689230,LOC107597011 coding upstream 649401 13452956 ~ 13469076 (-)
vezt vezt coding upstream 670768 13474323 ~ 13507294 (-)
G63552 NA non-coding downstream 212988 12582777 ~ 12587477 (-)
G63540 NA non-coding downstream 262088 12534965 ~ 12538377 (-)
G63538 LOC108427067 non-coding downstream 270824 12527889 ~ 12529641 (-)
G63519 NA non-coding downstream 464255 12335619 ~ 12336210 (-)
G63384 NA non-coding downstream 816905 11983296 ~ 11983560 (-)
G63617 NA non-coding upstream 48719 12852274 ~ 12854361 (-)
G63662 NA non-coding upstream 354817 13158372 ~ 13162362 (-)
G63664 NA non-coding upstream 355964 13159519 ~ 13166674 (-)
G63669 NA non-coding upstream 369812 13173367 ~ 13198835 (-)
G63692 NA non-coding upstream 428596 13232151 ~ 13237489 (-)
slc2a13 LOC108427068,LOC108280145,LOC107689243 other downstream 299802 12365468 ~ 12500663 (-)
G63516 NA other downstream 419909 12320555 ~ 12380556 (-)
G63217 NA other downstream 2389234 10314799 ~ 10411231 (-)
G63104 LOC108425317,LOC107562148,LOC107741714,LOC107687569 other downstream 3177677 9618661 ~ 9622788 (-)
LOC111192870 zgc:194209,LOC107584030,LOC107658744 other downstream 4626649 8166485 ~ 8173816 (-)
LOC103025415 iqsec3,LOC107689235 other upstream 2416 12805971 ~ 13027498 (-)
prkcq prkcq,LOC107748461,LOC107675981,LOC107555829 other upstream 1037638 13841193 ~ 13887868 (-)
G64034 NA other upstream 1981766 14785321 ~ 14786149 (-)
LOC111192906 NA other upstream 2186674 14990229 ~ 14992730 (-)
G64060 NA other upstream 2190609 14994164 ~ 14994832 (-)

Expression


Co-expression Network