G63709


Basic Information

Item Value
gene id G63709
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 13397632 ~ 13401310 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU85950
TTTTCATCTGACTTTGGAACATTACTGCCGTTTCTTAAAGGTCAACATAACAGGAGGTTAAATAACGTAATTTCTTCTTACATATGGCTGGTGAATAAGACCCTCTGCTCACAAATCAATTAAACAAACTTCCAAAATTTCCAAATTACTTCTCTGATGACAATCCAGTGTGTAATTCATTTATTGAAAACAAAGCCCAGATACTGCTTAGATATGAAAACTGCATGTGTTAaaacactcactcattcacatcAAGCCTTTTACAAAACCCTTCAAAAGTCCTATTATTGCACACCTCTCTTcataaggcttctgttttttctccattcatTCACTCGTACTCAGAGGTCCCCTTTGAGAAAGTGATCAAtagataatatattaaaaaatcctAACCCATATCAAATAAATCTCAATATACTATACACTTCATTCACTATGATATGTAAATACTATACACAGTTCTAGGAGAGTGGCTCGCCGTGTCTCAGCTATCTATTTGGTCATGATGAGGAATAAAATGTTAAGCTGACCGGTGTGCGGCTTTTCTTCTCtgttcttgttttcttgtttgttttttttaaacccctCCCTCCACCCACTCTGTCCCAGTACTACCATCACATTGGCTCCAGTGCAGGTATGATCAGTAACATgcaacaaaagaacaaaacataTTGTCACTCTTGGACAAAAACCTTATATCTCACAAATTGCAATTTTACAGTACAGAAAAAATCCTTTTTgacttttaatgaaagtcaatgtaaaaagattgaatttgttaatttgtttctattggtccattcatcaggaAATTTAGACAAAACTTTAAAGAActtgaaaaacagaaaatgagagactaaagatttttgcatgacagcaacAATAGGTTACTTACAAAATATATGGACGCACACCAGCTGGACAAACATAggtacacaaacatacataaacagACTTTCTAGTGAAGCTTTTAAAGGCCAATAAagctttttaatattaaaagtgtTACTGTCTTATAACCCATAAAACTACACAAGTtgaaataattgaaataattaCTACCTATTGGGTTTCAGCTAATCTGTATTTTTATGCAGATAACTTCATTGGCGTTTAAATGCTTCCATACACTTCATTATACTGCGGATCTAATGAGAAATCTGCATGTTTCATTAAACTGCACATAACACTCCAGTGTGCAACCCAGCAACTGTTATATAACCccattctgaataaaaatacaaaaacagaaaaaggcaGAACCCAAACAgatacattaaaaacaggttCCCTCCATTATTTTGTcatcacacacattctcacacacacacattcaaacaaacagcagagataaaACATTCCACCTTTTCTAATGTTTTCTTTGTAATCTTTTCTGAGACTTCGGTCATGTTCATTTGCTCAAATGACAGAAAACGAAAGTGGTTTAAATCGGACCTGAAGATACATGGCTAGTGTGAGGAAAAGATCAGTTAAATgaggaagaaggaaaaagcCTATTGGTCTGCCTGCCTAAAACAAAGCTAAAGTGCAGCCTTCTCAAACTTCATCCATCCACAGAACTATAGAGGAATAGTGTGACATGGTCTCAGTACTGGATGGACAGCAATTAAAGCAATACTTCAATAGTTTCAGCCAGATCTCTGTCTGCAGCATTCATAGCGCACACACTTAGTAGAAGCCACTTTGCAGCAATTGTTGCAGCAGTACAGTATTGTTTTGCTCAGTACAGTACTGAATTATTGTGGTAGTAAGTAAGTTATCAGTATTGCGATACACACGGACATGCCAAGAAATCGTTATGTTAAATGATTATAAAGTGTCAACTTAGGACGGTTTGGGAACATCAACAGCTTTataaagttgtgaggtgttatcatgtGAATAAGGTTgtacactggccagtgtgctcattgCAAGGTAACATGAATTAcaggagttggagtgaggtgtaGATGGATGGGACGACGTTCCATTTCTGAACTTGTGTGGGTATTTAATATTCCTCCATCCACAGTTTTAGGTGTGTACCAGGAATGCATCATAATGTACCTATACACCCTTAATAATTAGGCCTGGTTAGTTGGATTTAGTGCagtttatacataaaaaaaatcaccatactgtgattctgtgatactcgataTATCGCAAGGATAAAATCCTCAAAtaacaggaattatggatttattggtctcagtttcacagaattaaaCAACCAATATTCCTtactgcaggtttaccctatcATTAGATTAGCACCGCAACatggagtaataaagcagtaatatcAGTAATCAAATTTGGAGACAAGTCTTAGGAATTTCAGAttgcctatgtttcaataaatatatttacatttgatGCCACTTATTGATAATGTATTGCGAACAAAAACGatacaatatatcgcaataCTGATATTTTCTCCCACCCTATTAAGCACATGCcattttaataatacaaattacCGTAAAACAGTATTGAGATATTTTAACGTGTGGTATAGCACCCACACCAACCACACGCTAGAGATGAAGCAGACAAAGATTAGGCTGAAGGTGTTCGGCTCAAGTACTTAGTGGAAGATTCTCCACACCTTGCCTGCGTGTCTGTTGTTAAGAAtgtttgtatatgtatgtgtatagaCCTCTGGTATGCAGTACTCAGGCAGAAATACCAGTAAGACGAGTGTGATGTATAGAAGAAATATGCATGAACCTGCCTGCTTAAGGCTGGTGGCCGTCTTCTGATTTACTGatgctcaaaaaaaataaaaataaaataaaaataaaaaggtccaCCACAAATTATACAGTTATACACAACTCAAAATTAACCAGatgaaaaacaaagcaaaaagcaGGCAGTGGTTCATTAAGATGGACTATAAAGATCTTCTTCACCCTCATATTTATCCACGGCATTGTTGATATCATTTCCTTTAGAGCTCTCTGTTGATAGGCAAATAGAAAGAAGAACGACAGTCAGCCAGAACTGGTTTAACCAAAGAGGTCCTTCAGATCGTTATTGACCGAAGCGCTCTGTTTCAACATTCCCGTGTTCATGGTGGGGTTAGCTCCAGCTTGTGAGAAGTTCTGTGGGTTAAAGAAAGGGTTAGCTTGCATTCCAAACCCACCTTGCGACCCTGCTGCTGCCATGCCAATCGGTGCTGCCTGCATGCCGGCAGTCTGCGAGGGCTGGCCTGCACCGAACTGGTTGAGCCAGGGGGACGGGGCGGCAGGGCCGGCGACTGGTTTGGGGGTCATTTGGTTCAAGCTGACTTTGGGCTTGCTAGCAGAGAAGAGGGAATCCAGGGCTGACATGTCCGGAGGTTTGCTGGGCTGAGTCTGGTTCTGTGTGAGGGCGCTGAAGTTCGGGGTGCTGGTGGTGGTCGCCATCCCTCCGTACAGGCCAGGGGTGGCTGGCCGCATTCCCATGCCCCCAGCGTGGAAGCCCATGTTGGAATTGAAACCATTGTTCATGGTACCCATGCCACTCATGTTGGGTCCACTGGAGAAGCCAGAAGAGAGTGCGCCTCCAGTCTGCATGGGCGTTGTCCGAGGGCCAGAGCTCAGGGATAAGGTGTTAAGTGAGGTCATGTTGTTCAGTAGACTGCTGGTTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU85950 True 3650 lncRNA 0.40 2 13397632 13401310

Neighbor

gene id symbol gene type direction distance location
LOC103026035 NA coding upstream 1369 13386538 ~ 13396263 (+)
LOC103036201 NA coding upstream 15717 13369680 ~ 13381915 (+)
st8sia1 st8sia1,LOC107755164,LOC107748471,LOC107567669,LOC108279455,LOC108279490 coding upstream 94520 13271177 ~ 13303112 (+)
LOC103034836 NA coding upstream 154890 13210222 ~ 13242742 (+)
LOC103034184 LOC108427058,LOC108279609,LOC107689715,LOC107584717,LOC107748475,LOC107597007,LOC100708075,LOC102305399,LOC102790409 coding upstream 594061 12767838 ~ 12803571 (+)
usp44 usp44,LOC107755158,LOC107748469,LOC107667716,LOC107597009 coding downstream 32259 13433569 ~ 13445672 (+)
fgd6 NA coding downstream 106068 13507378 ~ 13539050 (+)
LOC103030426 nr2c1,LOC107689225,LOC107755159 coding downstream 143642 13544952 ~ 13557590 (+)
ndufa12 ndufa12,LOC107667714,LOC107755161 coding downstream 160126 13561436 ~ 13565100 (+)
tmcc3 tmcc3 coding downstream 190302 13591612 ~ 13633235 (+)
G63514 NA non-coding upstream 72124 13325300 ~ 13325508 (+)
G63510 NA non-coding upstream 86461 13257901 ~ 13311171 (+)
G63493 NA non-coding upstream 198797 13173393 ~ 13198835 (+)
G63490 NA non-coding upstream 203864 13170802 ~ 13193768 (+)
LOC111192873 NA non-coding upstream 225205 13171696 ~ 13172427 (+)
G63738 NA non-coding downstream 50436 13451746 ~ 13509597 (+)
G63743 NA non-coding downstream 71124 13472434 ~ 13475420 (+)
G63749 vezt,LOC107567659,LOC107667718 non-coding downstream 85089 13486399 ~ 13487618 (+)
G63756 NA non-coding downstream 139851 13541161 ~ 13542001 (+)
G63755 NA non-coding downstream 141303 13542613 ~ 13543511 (+)
LOC111192955 NA other upstream 236265 13156226 ~ 13161367 (+)
G63432 NA other upstream 928730 12468050 ~ 12468902 (+)
G63051 NA other upstream 3747545 9646579 ~ 9650087 (+)
LOC111192948 NA other upstream 3957068 9431499 ~ 9440564 (+)
LOC103041471 slc37a3,LOC106609230,LOC106576065,LOC107719875,LOC107758206,LOC107601005,LOC107562143 other upstream 4857509 8526218 ~ 8540123 (+)
gata3 gata3,LOC107555822 other downstream 765919 14167229 ~ 14242234 (+)
G64015 NA other downstream 1343425 14744735 ~ 14745082 (+)
arid2 arid2,LOC107707985,LOC107555896 other downstream 2994016 16395326 ~ 16426623 (+)
G64289 NA other downstream 3037910 16439220 ~ 16442449 (+)
G64431 NA other downstream 3351733 16753043 ~ 16753560 (+)

Expression


Co-expression Network