G63743


Basic Information

Item Value
gene id G63743
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 13472434 ~ 13475420 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU85993
taaagtgttgccAAGTGTCAACAAGTGTTTACTAAGTTTTGAGAGTGATTTATGTCACACAACATCGCTATATTTCCTAAATTTATGAATTTAagtgattttggagcatttctatcgttcaattaatcataaaattgaaataaattttaaaagacAAATAGCAGTGAAAAAGGAGATACATGGTTTAGTGTGACATCAAAGATACAAAAACTACGTACCCAGGAAGTACAGGACCCAAGTATTACATCTGAGATTGTATCAAAGCTAAAAcagtcatttttatatttttttgcactaccTGTTGTGGCTAAACCCAAACATTTGGCACAGTTCCTGATCAAACCTTCTGATTTTCTATCAATAGCACACTGCGATTCATTTGCTTGCtaattttaaactaaaagtaaaaaaaaaataaaaaaaaaaaacactcaaaatctATAAGGTTCTTCACTGATTTTAATTCTCTGAAATCCAATTTCCAAACCCTGGATAGAGTTTTCTGCCCTAGAGATGAAGCTCACGCATGTTGCCATGTTGTCATATTGCCACATTTTGGAAGTTTGCAATGTTCAAAATGCCCGTCCTTACTATGttagtggtggtgataaattagCCAGCGATGGTTAAAAAACCTTTCTGAATCTCAGTGATTACTTGACCACTAAAAATTACTAGAAAAAGAGCCAGTTTGCTTTTCCATGGCTACAACTGCCTATACCTGTATACATTCAGAGGCTAAAACCCACACCGTTTTTCCGTGATGTAccacacagttaaaaaaaaaaaaaaaaaaaaaaaaaactgtctgctGGCTTTCGTGCTTTAACTCTGCACGTTTCTTTAATATCTGattataagttataaaatagaaaatataatccttaatagTCCTTTAAAACACAGCCCTATTCCAGCAAAAAAACAGGTATCATAGTTTGTCTTAGGATGAAATTAGATCAAATGAGAAAGCAATCTTTATGACGGCTAACACTTGTTAAAATAAGCATAATGAGCAGGTGTCTACATACTTTTGGCTATACAGCGTACAACCCACACATAACCTCCCCAAACGCTCTTTGAACATGTGACAAAAATGACTATTCATGTCATTAATCTAAATATACCACTCTAACAAAATACCACTGACAGAAATAACAGAAATGGGCTGTATTTATAGAGGTAGTAATGTAGTGCTGAAGTCCAGTGGGCTGTTATGATTAATTTACACAAAGATTCATTCATGATGATCTTTTTACCAGGACGCTTTCATTTTCTGAGAGCAATAATGTCAGTTCTGTATGGGGCAGTGACCCCAGCAGATACACAGCTCCAGATGATAAGAGCCACAGCCCATCCAGTCCATCTGAAAAAGCCCTAACATGCCAAAAAATGACATGGGATAGCAGTaagtaaattgatcatgaagagCTACCTCAGGAATGGCCACAAGCGTAAAAGTTGTgagctgttagcttgtgagcaaTTGCCAGTTGAACACTTGCCAATGTGCATTAATTACAGTTCATGCAAGGCCTGATGCAGGTGGGTGCAGATGGATAGGGAATTCTATTTCTGAAGCTGtgcaggtatttaacattcctgcatccacagtgtcacatgtgtagtAGGAATATGTGATAGAAAGCtgatattaccacccacagtagacagcgaTTGCAGAATacggtaatgatcgtgaccggcagcgtctggctaaaattgtccatatGAACAGAGAAGCGACTCTGGCTAAAATCACTGAAGACCACATCCCATTTTTAAGaacatatgctttttttttgcctccttagggtatgccaaaagtcatgggacatgatgcCATGTCAGTGTATTAGAAAATTGTAGCtacatttttacacactgcATCAAAATCTTGCATCTTTTATTAAGTTTTCGTCATGAATTGGGCAAccttaattacagtataatcttcaccacaaaaaaacacactctgAAACATGACGCACGCGTTTGTGGACGGACGATTAGTGTTAAAAGTAACGTCAGTGACATAAATTACAGCATGAAGGTGTTTATCCATTTGTTTATACATGCGGGTGGATCACTGTAAAGTTCTGTGTCTGCGTGTGCTAACCTGTACCTGAGGGCAACTGGGAGAAAATTTTGAATGATGGAAATATATATGACCTTAGAgaccttaaacacacacacacacacacacgcgcacacacacacacgcgcacacacacacacgcaaaagAACATACAAATCTCATTCACATACCAGCCACTGCTGCCTGTGTCCAGAACTCAAactcaataaataaacctaCTGTAGATGGGAATAAATAACCTCTATGTGGTAAAATAGTTCAGTCAGCAGTCCTTCAATGTTGTTTCTTCGTCTCTGATGTCAGTTTCTTCAGCTGTGATGTCACCTCCTCCCCCTCTGCTCCAtcgtcctcttcctcctcctcctcctcctcctcctccgagtCCCCATAAGTGCATTCCTGCAGCTGTGTAAAGGTGTGAGAGCGAGCAGCTACCTGGGCAGCGAGGGCGGAGCCAAAACTTAGCGCTTCTGAGCCATGCAGTTCCGTCAGCCTGCTTATCACTGAGAGGGTTGGGACTTTGGGAGTGAGGGGGTGTGTCCCATCTAGCCCCTCCTCGTCAATCAACCCATCCGACTGGAAGAGTTGTACTGGTTCCGTTTCGTCCTGCCCACCTCCTTTGTCTTCCGCTTTCTCAGTGACTTCAGCAGTGCCGCAGCAGAATTCCGTTCTGacgtctttctctctgtcctccGTGCAGTCTTTCTCAGTCTCTCCGTCTTCCTGCCCCTCCTCTCCACCTCCCCCCAGTGGCTGCTGGGATACGTGGTTGCCCGTGACCGTTGTGAGCTGGCCACAGTCTAGAACTGCTGGCAATTCCAGGATAGTGGGACGCTCTGGGGCCTCTGTGACCTGGGCCAATGCGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU85993 True 2965 lncRNA 0.41 2 13472434 13475420

Neighbor

gene id symbol gene type direction distance location
usp44 usp44,LOC107755158,LOC107748469,LOC107667716,LOC107597009 coding upstream 26762 13433569 ~ 13445672 (+)
LOC103026035 NA coding upstream 76171 13386538 ~ 13396263 (+)
LOC103036201 NA coding upstream 90519 13369680 ~ 13381915 (+)
st8sia1 st8sia1,LOC107755164,LOC107748471,LOC107567669,LOC108279455,LOC108279490 coding upstream 169322 13271177 ~ 13303112 (+)
LOC103034836 NA coding upstream 229692 13210222 ~ 13242742 (+)
fgd6 NA coding downstream 31958 13507378 ~ 13539050 (+)
LOC103030426 nr2c1,LOC107689225,LOC107755159 coding downstream 69532 13544952 ~ 13557590 (+)
ndufa12 ndufa12,LOC107667714,LOC107755161 coding downstream 86016 13561436 ~ 13565100 (+)
tmcc3 tmcc3 coding downstream 116192 13591612 ~ 13633235 (+)
rbm17 rbm17,LOC107748463,LOC107755150,LOC107663450 coding downstream 282908 13758328 ~ 13773588 (+)
G63709 NA non-coding upstream 71124 13397632 ~ 13401310 (+)
G63514 NA non-coding upstream 146926 13325300 ~ 13325508 (+)
G63510 NA non-coding upstream 161263 13257901 ~ 13311171 (+)
G63493 NA non-coding upstream 273599 13173393 ~ 13198835 (+)
LOC111192873 NA non-coding upstream 300007 13171696 ~ 13172427 (+)
G63749 vezt,LOC107567659,LOC107667718 non-coding downstream 10979 13486399 ~ 13487618 (+)
G63756 NA non-coding downstream 65741 13541161 ~ 13542001 (+)
G63755 NA non-coding downstream 67193 13542613 ~ 13543511 (+)
G63791 NA non-coding downstream 98300 13573720 ~ 13677259 (+)
G63813 NA non-coding downstream 236489 13711909 ~ 13713440 (+)
LOC111192955 NA other upstream 311067 13156226 ~ 13161367 (+)
G63432 NA other upstream 1003532 12468050 ~ 12468902 (+)
G63051 NA other upstream 3822347 9646579 ~ 9650087 (+)
LOC111192948 NA other upstream 4031870 9431499 ~ 9440564 (+)
LOC103041471 slc37a3,LOC106609230,LOC106576065,LOC107719875,LOC107758206,LOC107601005,LOC107562143 other upstream 4932311 8526218 ~ 8540123 (+)
gata3 gata3,LOC107555822 other downstream 691809 14167229 ~ 14242234 (+)
G64015 NA other downstream 1269315 14744735 ~ 14745082 (+)
arid2 arid2,LOC107707985,LOC107555896 other downstream 2919906 16395326 ~ 16426623 (+)
G64289 NA other downstream 2963800 16439220 ~ 16442449 (+)
G64431 NA other downstream 3277623 16753043 ~ 16753560 (+)

Expression


Co-expression Network