G63827


Basic Information

Item Value
gene id G63827
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 13754865 ~ 13755370 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU86129
CCGTTTACCCCGAAGATGTGGAGGGGGTACTCAGCCGCGGTGAAGATGAaggtgaggaggaggagagatgaTGCCCGCATGTCCAGAAATACCAACACTGGGTCTGCCTGCCGGTGATTTACACATATTTTAGGAAATACACAGACTCCAGTCATCTGAAGCACGGCCTGTGACTACGACAGCTTCCTTTCCGTTCAGCAAAATAACATAAGTAGCCCGGTTTCACtttcacttaaacacacacacacacacacacacacacacactgcgcacACAAACACTGAGCACACACCGCAGAGCGTCCCAACACTTCGCGTGGGCTGGGGGTATAAATAACGCCGTGGGTCACAGTGGATCAGGGTAGCATATGGCGGTGCTGTACCGAGCTGTGTTCCTCAGGCAAAATTATATTTTCCACAGAGCTCCTTCAGTCCAGACCGGAGACGTCCCAGTCACTGATCCACCAACAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU86129 True 470 lncRNA 0.52 2 13754865 13755370

Neighbor

gene id symbol gene type direction distance location
tmcc3 tmcc3 coding upstream 121630 13591612 ~ 13633235 (+)
ndufa12 ndufa12,LOC107667714,LOC107755161 coding upstream 189765 13561436 ~ 13565100 (+)
LOC103030426 nr2c1,LOC107689225,LOC107755159 coding upstream 197275 13544952 ~ 13557590 (+)
fgd6 NA coding upstream 215815 13507378 ~ 13539050 (+)
usp44 usp44,LOC107755158,LOC107748469,LOC107667716,LOC107597009 coding upstream 309193 13433569 ~ 13445672 (+)
rbm17 rbm17,LOC107748463,LOC107755150,LOC107663450 coding downstream 2958 13758328 ~ 13773588 (+)
pfkfb3 pfkfb3 coding downstream 30876 13786246 ~ 13806954 (+)
itih5 itih5 coding downstream 259746 14015116 ~ 14042802 (+)
itih2 itih2,LOC107748478,LOC107666937 coding downstream 301415 14056785 ~ 14081113 (+)
atp5c1 atp5c1,LOC107728502,LOC107748457 coding downstream 334962 14090332 ~ 14098546 (+)
G63813 NA non-coding upstream 41425 13711909 ~ 13713440 (+)
G63791 NA non-coding upstream 77606 13573720 ~ 13677259 (+)
G63755 NA non-coding upstream 211354 13542613 ~ 13543511 (+)
G63756 NA non-coding upstream 212864 13541161 ~ 13542001 (+)
G63749 vezt,LOC107567659,LOC107667718 non-coding upstream 267247 13486399 ~ 13487618 (+)
G63978 NA non-coding downstream 627512 14382882 ~ 14383150 (+)
G63979 NA non-coding downstream 677601 14432971 ~ 14433787 (+)
G63992 NA non-coding downstream 718656 14474026 ~ 14474399 (+)
G64001 NA non-coding downstream 912746 14668116 ~ 14731918 (+)
G64022 NA non-coding downstream 1029539 14784909 ~ 14859165 (+)
LOC111192955 NA other upstream 593498 13156226 ~ 13161367 (+)
G63432 NA other upstream 1285963 12468050 ~ 12468902 (+)
G63051 NA other upstream 4104778 9646579 ~ 9650087 (+)
LOC111192948 NA other upstream 4314301 9431499 ~ 9440564 (+)
LOC103041471 slc37a3,LOC106609230,LOC106576065,LOC107719875,LOC107758206,LOC107601005,LOC107562143 other upstream 5214742 8526218 ~ 8540123 (+)
gata3 gata3,LOC107555822 other downstream 411859 14167229 ~ 14242234 (+)
G64015 NA other downstream 989365 14744735 ~ 14745082 (+)
arid2 arid2,LOC107707985,LOC107555896 other downstream 2639956 16395326 ~ 16426623 (+)
G64289 NA other downstream 2683850 16439220 ~ 16442449 (+)
G64431 NA other downstream 2997673 16753043 ~ 16753560 (+)

Expression


Co-expression Network