G63852 (rbm17,LOC107755150,LOC107748463)


Basic Information

Item Value
gene id G63852
gene name rbm17,LOC107755150,LOC107748463
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 13764764 ~ 13769051 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU86167
ctttaataataaaatgtgggtCAAATCCTGAGAGAttcattgtgtagggctaaataacttaacttattgatctgatgtatttgttagcttaaAATAACATCTCcaacaataaaggaaaaatattTCTGGAGTaaatttttcatgattttttttcaaaactttctgggtatttttatttttccaaaactcatccaggcctggaaattgctatgttaaaattccatgacttttcccgTTTTTTTCATGATCGTACGAACCCTGCTATATCAGTGTTTCAGCTGTAATCTGTACTGATGTGCCACATCACAACTCTACTCTCAAGCTGTCTGTCTGAGTTACACTTTATTGCCTCTCTGGAGATTGGGGGTTACTTTAATTAATTCTGTGTGCAGAAATGGACCAAACAATAAAAAGCTGAAGGCCCTGGAAGCAGCTCACCTCAAATATAACACATTTCACCACCTTGCCGTATTTCTCACACTCCTCTTTGGTCTCCGCCTCCAGATCTTCATCCACCTCTCCTCTTCCCACCATATTCCGCAATAGAACCACCTTCGTAGGACATTTGAGGATTTCTGTCAGTGGGTTGACCTCGTTCTTCTTTGACGGGTCTGATGCTCCCGAATTAGACCCAGGTGTGTCAGCCGCACTCTGACTGGATCCTGAATTCTTTTCCGTTGAGTCTCCGATGATGATTTTCCCGCCACGTTTGCTGGTCTTCTCCACCGACAGAGCCGTGCTCAAACCCTGCTCATGCTTTCCCAGACCCTGACCCTCACGGAACCCATACTTCTGCATGATCTTATGAGCCACCGTCCC

Function

symbol description
rbm17 Predicted to enable RNA binding activity. Predicted to be involved in alternative mRNA splicing, via spliceosome. Predicted to act upstream of or within regulation of RNA splicing. Predicted to be located in nucleoplasm. Predicted to be part of spliceosomal complex. Orthologous to human RBM17 (RNA binding motif protein 17).

NR:

description
PREDICTED: splicing factor 45 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU86167 True 819 lncRNA 0.43 4 13764764 13769051

Neighbor

gene id symbol gene type direction distance location
LOC103038708 NA coding downstream 9282 13712234 ~ 13755482 (-)
LOC103026945 LOC108427039 coding downstream 71914 13646396 ~ 13692850 (-)
vezt vezt coding downstream 257470 13474323 ~ 13507294 (-)
LOC103026355 metap2,metap2a,LOC107755160,LOC107689230,LOC107597011 coding downstream 295688 13452956 ~ 13469076 (-)
depdc4 LOC108427048 coding downstream 331832 13423638 ~ 13432932 (-)
sfmbt2 sfmbt2 coding upstream 153488 13922539 ~ 13997493 (-)
kin kin coding upstream 311238 14080289 ~ 14089552 (-)
snd1 snd1,LOC107738807,LOC107732977 coding upstream 1501812 15270863 ~ 15554632 (-)
LOC103045938 LOC108432519 coding upstream 1809823 15578874 ~ 15624348 (-)
akap14 NA coding upstream 2156495 15925546 ~ 15927271 (-)
G63849 NA non-coding downstream 4761 13758263 ~ 13760003 (-)
G63830 NA non-coding downstream 202670 13561359 ~ 13562094 (-)
G63773 NA non-coding downstream 221196 13542626 ~ 13543568 (-)
G63766 NA non-coding downstream 316965 13444767 ~ 13447799 (-)
G63704 NA non-coding downstream 419343 13345150 ~ 13345421 (-)
G63904 NA non-coding upstream 222204 13991255 ~ 13991792 (-)
G63939 atp5c1,LOC107675979 non-coding upstream 321328 14090379 ~ 14093476 (-)
G63947 taf3,LOC107555823,LOC107748456,LOC107675973 non-coding upstream 422637 14191688 ~ 14196509 (-)
G63955 gata3 non-coding upstream 457214 14226265 ~ 14227320 (-)
G63963 NA non-coding upstream 498354 14267405 ~ 14267758 (-)
LOC103025415 iqsec3,LOC107689235 other downstream 737266 12805971 ~ 13027498 (-)
slc2a13 LOC108427068,LOC108280145,LOC107689243 other downstream 1264101 12365468 ~ 12500663 (-)
G63516 NA other downstream 1384208 12320555 ~ 12380556 (-)
G63217 NA other downstream 3353533 10314799 ~ 10411231 (-)
G63104 LOC108425317,LOC107562148,LOC107741714,LOC107687569 other downstream 4141976 9618661 ~ 9622788 (-)
prkcq prkcq,LOC107748461,LOC107675981,LOC107555829 other upstream 72142 13841193 ~ 13887868 (-)
G64034 NA other upstream 1016270 14785321 ~ 14786149 (-)
LOC111192906 NA other upstream 1221178 14990229 ~ 14992730 (-)
G64060 NA other upstream 1225113 14994164 ~ 14994832 (-)
LOC103027187 NA other upstream 1902255 15671306 ~ 15867795 (-)

Expression


Co-expression Network