G63947 (taf3,LOC107555823,LOC107748456,LOC107675973)


Basic Information

Item Value
gene id G63947
gene name taf3,LOC107555823,LOC107748456,LOC107675973
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 14191688 ~ 14196509 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU86291
GAAACTGCACTTCCAATCTAAATAAATGAGAAcaacaatattattaaaaaggcAGATTATAGTACacacttcttttcttttctttttcagagATGTGATTCTGATCAGTCAGCATGGAGTTGAAAAACGTCAATGAGTGAGGAGGACGTGTGGGGGAGTGGGGGATTCGTCTTGACGCgcgctcgcacacacacacacacctaccgaACAGCCGCTGGCTTCCGTACAAAGAGCAGTATAGACATACGGGAGAATTatccacataaaaaaattaacatagaCTTCTgcaaatatcatttaaaaaatacataaatgacTACAGTGAGCGAGTTAAAAGGAGCGGAGGAAACGAAACCCAAACTCAGAGGGGGGGACTGGAACTGAAATAAGGCATTGATGTATAAACAGTGAGGAAGGGGCGAGAGACCTATagacagaaagtgagagaaagagaaagagttgaTGATCAGTGCGCTTTACGTTtcctcttttttgtctttttgtctttcttcttGCCAGCGCACTTCACACAGTACCAGGACTGGTCCTCCGGTGGGGCGGTTAAGATGCCAACACATGgcCAGTGGTACCAGTCGTCACACTCATCGCAACCAATCATAGGGCTTCCATCATCAGGCTTATTACAGCCAGGACAGATCCAGATCTGATTACCCCACTCGTCTCGAATCACGTATGCGCTGACCGTCTCCGTCACCACGCTGCAGCCGCGGGCCTTGGCCTGGCTGGGCTGGGGCTGGAGCACTGGGGGTGGAATAGGTGGCGGTAGCACCACCGGAGGGGCACGGGGTGGAGGGGTGACcggaggtggtggaggagggggaggagctggaggagaacGCATCCGGGCGCCTGGACCGGCCCGGGCCACTGGAGTCCTTGGGGGAGGAGGGGTGGGCTCCAAATCTGATGAAACCTTGCTga

Function

symbol description
taf3 Enables transcription cis-regulatory region binding activity. Acts upstream of or within hemopoiesis and regulation of muscle organ development. Predicted to be part of transcription factor TFIID complex. Orthologous to human TAF3 (TATA-box binding protein associated factor 3).

NR:

description
PREDICTED: LOW QUALITY PROTEIN: transcription initiation factor TFIID subunit 3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU86291 True 942 lncRNA 0.51 3 14191688 14196509

Neighbor

gene id symbol gene type direction distance location
kin kin coding downstream 102136 14080289 ~ 14089552 (-)
sfmbt2 sfmbt2 coding downstream 194195 13922539 ~ 13997493 (-)
LOC103038708 NA coding downstream 436206 13712234 ~ 13755482 (-)
LOC103026945 LOC108427039 coding downstream 498838 13646396 ~ 13692850 (-)
vezt vezt coding downstream 684394 13474323 ~ 13507294 (-)
snd1 snd1,LOC107738807,LOC107732977 coding upstream 1074354 15270863 ~ 15554632 (-)
LOC103045938 LOC108432519 coding upstream 1382365 15578874 ~ 15624348 (-)
akap14 NA coding upstream 1729037 15925546 ~ 15927271 (-)
LOC111192960 NA coding upstream 2151050 16347559 ~ 16351713 (-)
scaf11 NA coding upstream 2234791 16431300 ~ 16450766 (-)
G63939 atp5c1,LOC107675979 non-coding downstream 98212 14090379 ~ 14093476 (-)
G63904 NA non-coding downstream 199896 13991255 ~ 13991792 (-)
G63852 rbm17,LOC107755150,LOC107748463 non-coding downstream 422637 13764764 ~ 13769051 (-)
G63849 NA non-coding downstream 431685 13758263 ~ 13760003 (-)
G63830 NA non-coding downstream 629594 13561359 ~ 13562094 (-)
G63955 gata3 non-coding upstream 29756 14226265 ~ 14227320 (-)
G63963 NA non-coding upstream 70896 14267405 ~ 14267758 (-)
G63993 NA non-coding upstream 277516 14474025 ~ 14474408 (-)
G63994 NA non-coding upstream 291684 14488193 ~ 14488804 (-)
G63997 NA non-coding upstream 369140 14565649 ~ 14565997 (-)
prkcq prkcq,LOC107748461,LOC107675981,LOC107555829 other downstream 303820 13841193 ~ 13887868 (-)
LOC103025415 iqsec3,LOC107689235 other downstream 1164190 12805971 ~ 13027498 (-)
slc2a13 LOC108427068,LOC108280145,LOC107689243 other downstream 1691025 12365468 ~ 12500663 (-)
G63516 NA other downstream 1811132 12320555 ~ 12380556 (-)
G63217 NA other downstream 3780457 10314799 ~ 10411231 (-)
G64034 NA other upstream 588812 14785321 ~ 14786149 (-)
LOC111192906 NA other upstream 793720 14990229 ~ 14992730 (-)
G64060 NA other upstream 797655 14994164 ~ 14994832 (-)
LOC103027187 NA other upstream 1474797 15671306 ~ 15867795 (-)
G64387 NA other upstream 2388556 16585065 ~ 16585647 (-)

Expression


Co-expression Network