G63979


Basic Information

Item Value
gene id G63979
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 14432971 ~ 14433787 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU86327
CATCACAGTATGGTACGGCAGTGCCACTGCTGCTGAACACAAGGCCCTGCAGAGAGTGGTGAAGTCTGCCCAACACATCACCGCAACTACCCTTCCATCCATACATCACCTCTACAACAAGAGATGCCTGAGGAAGGCTATCAGCATCTCCTCCGATCCTACCCACCCCAGCCACTTCCTGTTCCAACCCCTGCCTTCCAGGAAAAGGTACAGGAACATTAGAACCAGAACCACCAGACTGAAGAACAGCTTTTTCCCACGTGCTGTGAAACTGCTGTCTCCAGCAACACTAACTTCAACCTGAACAGTACACAGACTGACCACTGACCACTCCCAGTTTCCTACATGGCCACTGATTGCTTCAGCACAGAGACTGTATGCACTTTGCACTTTAATCATTTCACTTATATGCACTCTGCACTTTAATCAACCTGGCCTACCTCTACTATTATACACATATGGACTATATACAATGTACCGCTGTCACTActgcactttaaacactttaactttaaacaGTCACACGAACATAAACATACCAataatcttattgtaactattgtTTGTGTCCCCTGTACTTTTGCCCTATAAGTGTGTTTGATGTCCCCTGTACCTTCTGCCCCtacactgtgtgttttgttttgcacttctcTGTATCTATCGTCTGAGCACTATTTACTCTGTCCTACACTTTTCTTGTCTGCACTGGAGATCTAGCCTAATAGTGTTTCGTTTTACTGTACAACCCTGTATcagtataatgacaataaattgaattgaattgaatgaatgaatatatttgTCAATATAGTATTAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU86327 True 817 lncRNA 0.43 1 14432971 14433787

Neighbor

gene id symbol gene type direction distance location
taf3 taf3,LOC107748456,LOC107555823,LOC107675973 coding upstream 236425 14102939 ~ 14196546 (+)
atp5c1 atp5c1,LOC107728502,LOC107748457 coding upstream 334425 14090332 ~ 14098546 (+)
itih2 itih2,LOC107748478,LOC107666937 coding upstream 351858 14056785 ~ 14081113 (+)
itih5 itih5 coding upstream 390169 14015116 ~ 14042802 (+)
pfkfb3 pfkfb3 coding upstream 626017 13786246 ~ 13806954 (+)
LOC111192957 NA coding downstream 287245 14721032 ~ 14727355 (+)
fam200b NA coding downstream 563331 14997118 ~ 15000582 (+)
LOC103045633 lrrc4.1,LOC108432552,LOC107699068,LOC107557314,LOC107732976,LOC105904105 coding downstream 988214 15422001 ~ 15426787 (+)
LOC111192874 NA coding downstream 1130230 15564017 ~ 15571205 (+)
ccdc87 NA coding downstream 1470555 15904342 ~ 15923062 (+)
G63978 NA non-coding upstream 49821 14382882 ~ 14383150 (+)
G63827 NA non-coding upstream 677601 13754865 ~ 13755370 (+)
G63813 NA non-coding upstream 719531 13711909 ~ 13713440 (+)
G63791 NA non-coding upstream 755712 13573720 ~ 13677259 (+)
G63755 NA non-coding upstream 889460 13542613 ~ 13543511 (+)
G63992 NA non-coding downstream 40239 14474026 ~ 14474399 (+)
G64001 NA non-coding downstream 234329 14668116 ~ 14731918 (+)
G64022 NA non-coding downstream 351122 14784909 ~ 14859165 (+)
G64047 NA non-coding downstream 518948 14952735 ~ 14958268 (+)
G64057 NA non-coding downstream 557416 14991203 ~ 14992008 (+)
gata3 gata3,LOC107555822 other upstream 190737 14167229 ~ 14242234 (+)
LOC111192955 NA other upstream 1271604 13156226 ~ 13161367 (+)
G63432 NA other upstream 1964069 12468050 ~ 12468902 (+)
G63051 NA other upstream 4782884 9646579 ~ 9650087 (+)
LOC111192948 NA other upstream 4992407 9431499 ~ 9440564 (+)
G64015 NA other downstream 310948 14744735 ~ 14745082 (+)
arid2 arid2,LOC107707985,LOC107555896 other downstream 1961539 16395326 ~ 16426623 (+)
G64289 NA other downstream 2005433 16439220 ~ 16442449 (+)
G64431 NA other downstream 2319256 16753043 ~ 16753560 (+)
LOC103030423 pcyt2,LOC108437168,LOC108277112,LOC107701914,LOC105013038,LOC107576708,LOC107729574,LOC106601930 other downstream 2399503 16833290 ~ 16888195 (+)

Expression


Co-expression Network