LOC111192906


Basic Information

Item Value
gene id LOC111192906
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 14990229 ~ 14992730 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU86468
tttctcctggCATACTTCGGATTCCTCAGATGCTCAgaattcacttcacttaaaatcTCCCACAACTCCTTTTCATACCCCCTCATATCAGATCTCAGCATCCTGGACTCGGATACTCTCACCTTTAAAATCAAGCGAAGCAAAACTGACCAACTTGGCAAAACCACGATCCTCCATCTGTTTAAACTTGACTCACCCCTCAGCCCGTACGAACCACTCGTCCACCACCTAAATCTCCGGCTCTCTCAACAAGCATCACCTTCAGATCCTCTGTTCACCACGGAATCTGGTAGTATTATCACAAGGCACTGGTTCCACACACATTTCCGCCGCATCCTTTCAGTCAACGGTTACTCACCAGACCAATTCTCCGCCCACTCATTCCGCATCGGTGCAGCATCCAACGCCTCCAGACAAGGAATCCCCGAGCACGTCATCAAGCTTCTCGGACGGTGGTCTTCTCAGGCGTACCACTTATACATCCGTTCCAAACCAGACGATTTGAGACAGGCTCATCTCAAACTAGCTTCATTATAAGCTCCATATTTTGGGGATATAAttgcacgcttcttcagcacgcagttcagaactccagcccaaatttccccgagttccctcccctttttcttcctccttttctacttctataaggcg
>TU86471
CTCAACGCCCCCTTTTTCTGTATTTCGCATCAATCCTTTGGGCATTGCCACACGAAAATACTCTGGCAAGAAGAGGATCATAATTGATCTCTCGGCTCCGCATGGCTCTTCGGACCCGTCCATCAACAGCCTCATACCTAGTTCTGAATTTTCTCTCCGTTACGCGACCGTGGATTGTGCCATCGAAGCCATCAAGTTGGCCGGCAGAGGTGCTTGGCTGTCGAAGGCCGACATCATCTCAGCTTTTAAAATCCTACCCCTCCATCCTGACTCTTGGCACCTTTTTGGAGTCCGCTGGGACGATCAGTTTTACTTTTCCGTTCGCCTTGCTTTTGGGTGCAAAAGCAGCCCAAAGCTTTTTGATTCCTTCGCTGAGGCGCTGTGCTGGATCTTGCTGAATAAACACAGGCTCCCGTTCGTGCTCCACCTCCTGGATGATTTTCTCATCATTGACTCGCCTTCCTCGCCCCCCTCGCGGGGCCTTGACGCCGTGACCAGCACTTTCACTCGTCTCGGAGTCCCGATTTCGGAGGAGAAGACCGTGGGTCCCGCCACGTCTCTGGAGTTCCTCGGGATCATTCTCGACTCCGCTTCCTTCCAAGCTTCTCTTCCTCAGGAAAAGCTTGATCGCGTCACTTCTTTCATCTCCGACTTTCTCAGTTTTCCCACCCGTACTAAACAGCAGCTTCTTTCCCTGCTCGGCCACTTTAATTACGCTACCCAAATCATACCTCAGGGTCGTTCTTTCATCTCCCATCTCCTTCGCTTATCTTCTTCTGTCCGATCCCTCCACCATTTCGTCACGCTCGACGAATACTGCACGTCGGAGCTCCGATTCTGGCTCTCTCTCCTCCGCCACTGGAACGGGATCTCCTTTTTCTATGCCGACGCAGCTTCCAGCCCTTCTGATGTTCAGCTGTTCACTGATGCTGCGCCTTCCTCTGGTTTCGGCGGCTATTACGGCGGACGCTGGTTCGCCTCTGCCTGGCCGAAGCAATTCGTCCGCTCTGGGAGATTTATCCTATAGTTGTCGCTGCCCTCCTTTGGGGACATGAATGGTCAGGAAAATCAATTTTACTCCATTCAGACAATCTCGCCGCGGTCCACATCATCAACAAAAGTAGATCAAAATCGCTAGAAATAATGCCTTTTATCCGTCGCCTCACTTGGCACTCCATAAAGCATCAGTTTATAATTAAAGCTGTCCACATCCCAGGTTTATCTAACTCTATTGctgactctctttctcgctttcaATTCCAGAAATTCAGATCCTTGGCTCCGCATGCAGACTGCAAACCCACGCCGGTACCTATCCATTTTCACAAACTACACTAACACCTAACCCCCGTCTGAACGAACTAATCCTCCAAGCACAACAAACCATCCTTTCAGCCGTTTCCCCACAGACACTCTCTACTTACTGGTCAAGCTGGAAGCATACAAAATTTCCACTCCGCACATAATATATCTTTCCCTTCTCATCATCCATCCGTAATAGCAGCTTATATTACTTTCATTCACACTCAACATTCAGCCCGTTCCTCATCAC
>XM_022671174.1
ATGTCGTGTCTTCCCTTCTGCGACAGGAGCTCTCCAGTGGTTTCATCATCGGTCCTTTCTCAACGCCCCCTTTTTCTGTATTTCGCATCAATCCTTTGGGCATTGCCACACGAAAATACTCGCAAGAAGAGGATCATAATTGATCTCTCGGCTCCGCATGGCTCTTCGGACCCGTCCATCAACAGCCTCATACCTAGTTCTGAATTTTCTCTCCGTTACGCGACCGTGGATTGTGCCATCGAAGCCATCAAGTTGGCCGGCAGAGGTGCTTGGCTGTCGAAGGCCGACATCATCTCAGCTTTTAAAATCCTACCCCTCCATCCTGACTCTTGGCACCTTTTTGGAGTCCGCTGGGACGATCAGTTTTACTTTTCCGTTCGCCTTGCTTTTGGGTGCAAAAGCAGCCCAAAGCTTTTTGATTCCTTCGCTGAGGCGCTGTGCTGGATCTTGCTGAATAAACACAGGCTCCCGTTCGTGCTCCACCTCCTGGATGATTTTCTCATCATTGACTCGCCTTCCTCGCCCCCCTCGCGGGGCCTTGACGCCGTGACCAGCACTTTCACTCGTCTCGGAGTCCCGATTTCGGAGGAGAAGACCGTGGGTCCCGCCACGTCTCTGGAGTTCCTCGGGATCATTCTCGACTCCGCTTCCTTCCAAGCTTCTCTTCCTCAGGAAAAGCTTGATCGCGTCACTTCTTTCATCTCCGACTTTCTCAGTTTTCCCACCCGTACTAAACAGCAGCTTCTTTCCCTGCTCGGCCACTTTAATTACGCTACCCAAATCATACCTCAGGGTCGTTCTTTCATCTCCCATCTCCTTCGCTTATCTTCTTCTGTCCGATCCCTCCACCATTTCGTCACGCTCGACGAATACTGCACGTCGGAGCTCCGATTCTGGCTCTCTCTCCTCCGCCACTGGAACGGGATCTCCTTTTTCTATGCCGACGCAGCTTCCAGCCCTTCTGATGTTCAGCTGTTCACTGATGCTGCGCCTTCCTCTGGTTTCGGCGGCTATTACGGCGGACGCTGGTTCGCCTCTGCCTGGCCGAAGCAATTCGTCCGCTCCGCTGCGCACCTGCGCGATTCTTCTGCGCTCTGGGAGATTTATCCTATAGTTGTCGCTGCCCTCCTTTGGGGACATGAATGGTCAGGAAAATCAATTTTACTCCATTCAGACAATCTCGCCGCGGTCCACATCATCAACAAAAGTAGATCAAAATCGCTAGAAATAATGCCTTTTATCCGTCGCCTCACTTGGCACTCCATAAAGCATCAGTTTATAATTAAAGCTGTCCACATCCCAGGTTTATCTAACTCTATTGctgactctctttctcgctttcaATTCCAGAAATTCAGATCCTTGGCTCCGCATGCAGACTGCAAACCCACGCCGGAATCAAAAATCAGAAACTCCATCCTCACACGAACGAGCTCCCATCTCACCAGAAATCCTCCATCGTTGCATTCAAACCCTCCGATCAGGCTTTTACCCtccgacaacatttctcctgATCTCAGCATCCTGGACTCGGATACTCTCACCTTTAAAATCAAGCGAAGCAAAACTGACCAACTTGGCAAAACCACGATCCTCCATCTGTTTAAACTTGACTCACCCCTCAGCCCGTACGAACCACTCGTCCACCACCTAAATCTCCGGCTCTCTCAACAAGCATCACCTTCAGATCCTCTGTTCACCACGGAATCTGGTAGTATTATCACAAGGCACTGGTTCCACACACATTTCCGCCGCATCCTTTCAGTCAACGGTTACTCACCAGACCAATTCTCCGCCCACTCATTCCGCATCGGTGCAGCATCCAACGCCTCCAGACAAGGAATCCCCGAGCACGTCATCAAGCTTCTCGGACGGTGGTCTTCTCAGGCGTACCACTTATACATCCGTTCCAAACCAGACGATTTGAGACAGGCTCATCTCAAACTAGCTTCATTATAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU86468 False 654 lncRNA 0.48 1 14990229 14990882
TU86471 False 1552 lncRNA 0.50 2 14991090 14992672
XM_022671174.1 True 1959 mRNA 0.51 4 14990346 14992730

Neighbor

gene id symbol gene type direction distance location
kin kin coding downstream 900677 14080289 ~ 14089552 (-)
sfmbt2 sfmbt2 coding downstream 992736 13922539 ~ 13997493 (-)
LOC103038708 NA coding downstream 1234747 13712234 ~ 13755482 (-)
LOC103026945 LOC108427039 coding downstream 1297379 13646396 ~ 13692850 (-)
vezt vezt coding downstream 1482935 13474323 ~ 13507294 (-)
snd1 snd1,LOC107738807,LOC107732977 coding upstream 278133 15270863 ~ 15554632 (-)
LOC103045938 LOC108432519 coding upstream 586144 15578874 ~ 15624348 (-)
akap14 NA coding upstream 932816 15925546 ~ 15927271 (-)
LOC111192960 NA coding upstream 1354829 16347559 ~ 16351713 (-)
scaf11 NA coding upstream 1438570 16431300 ~ 16450766 (-)
G64054 NA non-coding downstream 10272 14979722 ~ 14979957 (-)
G64048 NA non-coding downstream 32822 14884012 ~ 14957407 (-)
G64043 NA non-coding downstream 109650 14880345 ~ 14880579 (-)
G64018 NA non-coding downstream 217065 14772875 ~ 14773164 (-)
G64011 NA non-coding downstream 267694 14718802 ~ 14722535 (-)
G64063 NA non-coding upstream 7079 14999809 ~ 15000025 (-)
G64064 NA non-coding upstream 10939 15003669 ~ 15003877 (-)
G64085 NA non-coding upstream 65644 15058374 ~ 15059643 (-)
G64156 NA non-coding upstream 672446 15665176 ~ 15668027 (-)
LOC111192959 NA non-coding upstream 897692 15890422 ~ 15907327 (-)
G64034 NA other downstream 204080 14785321 ~ 14786149 (-)
prkcq prkcq,LOC107748461,LOC107675981,LOC107555829 other downstream 1102361 13841193 ~ 13887868 (-)
LOC103025415 iqsec3,LOC107689235 other downstream 1962731 12805971 ~ 13027498 (-)
slc2a13 LOC108427068,LOC108280145,LOC107689243 other downstream 2489566 12365468 ~ 12500663 (-)
G63516 NA other downstream 2609673 12320555 ~ 12380556 (-)
G64060 NA other upstream 1434 14994164 ~ 14994832 (-)
LOC103027187 NA other upstream 678576 15671306 ~ 15867795 (-)
G64387 NA other upstream 1592335 16585065 ~ 16585647 (-)
G64492 NA other upstream 1889605 16882335 ~ 16887903 (-)
LOC111192911 cyth3b,cyth3,LOC107556600,LOC106518738,LOC108239256,LOC107376516,LOC102303741,LOC108437157,LOC108258062 other upstream 2542566 17535296 ~ 17664561 (-)

Expression


Co-expression Network