LOC103027187


Basic Information

Item Value
gene id LOC103027187
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 15671306 ~ 15867795 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU86603
CTTAAACCAATATTGCACCCTTTGGCAGACCAGGAAGGGATCACAGGAGCACAGGCTCTGGCCACAGCTGCAGAAAAGTTGCAGGTGGAGCACCAGTGGAGAGACGATTTTGAGGAAGACTACAATCAATATTACAATGCAAAAGATGATACCTACCTCAATAATACTCTGGACTTCATAAAAGACCCAGCCTTTAAGCGCCTTGTGTCGTACAACAGTACAGCAGTTCATATCCCTACTGACATCTATGAAGGCTCTGAAGACCCGGCGAAGCCTGCAGACCGAATTTAGTGGTTGGGCGTGGCACAGGCACAGCAGGCCTGGCCTCTGATTcacctcagcagcagcagctgctcctcctctcaccactctctctctctctctctctctcaaacccTGCAGCCCTGTGAACGTCATAACCTGTGAATGTTAATACACATGTCCCTGTTCTCAAGTTCCAGCTACTGAAACAACACTCCCTCAGCAGGGTCCAATCACTCTTGCACTTTCATAAACACATTATAAGCCAACTTACATCCCTGTTATGGGGAATCAGCAAAGCATAATTTTAACATGCTAACAGAAACATGGTTATTATTTTTGGGTCTTCTGTAGCTGTTCCTTCCTCTCAGCATGGTGTgctgttagcttttagccacacttttagcttttagcctcaATTCCTTGGATTTCACACCAGACATTTTCAGTTTGCTCCTGTATGAGTCAGTGCAGCTTTTCACACTTGACATGCTTATTGTACGGAAACAATACATAAACTCTGGTTCGATTTTTCTATAAATTTCACATGTTGCATGTGGCATTTTAGTAGTTTCCTGCCACAAAATGaagtctttttttaagtatgtttttatattgcatTACATTTGCATTATTCTTGGCAAATATACAGTGTGAGTCAGTCACATgacacccttttattttagaaatgaaaGTGAAATGAAACAAAAGGGAAAATGATATTTCAGGTATTTATAACTTCCTAAAATAATTGCCTAAATTCtttcaggaaacacacacacacaaaaacatatggTTTAAGAGGATGGTTTATCATAAAGCCGAGAACCAACTAAAACAGtcctaattttttttcaaatattggTTGAAAAgacatttcaacattttaatattttagcagCCACAAATTAAAGAGCATTTCTAGGCAGCTTTATGAATTGCTCTTTTGCTGACTTAAATGCagacaaaaaaatcttaaaactcaACGATAAGACTAAACAATTGTGCAACATATATAACCTATAACCTTTGTTTATTAGAAATAAGCTTTTTATCATAGTAAAAATAGGCGACAAGACCTGAATCATGGAAATTAGTTCAGTGAAGGTAGCTGCCATCTTGGAAAGCTATTATTATAATGGTCtgaatcacattttattttaacttggtCATAATAAATTAGCTAAAGTCACCAAAAGGGGTGGAATCAAATGATCTGATTAGCTGAGGGTATTAGTGATTTTACCAGAGCTGACTATACAGAATCATGAGGAGATGATTTTTAGAAGGTGACGATGTATGCAATGGGCGTGGGGGGGCTATCTATCCTAGCTATGTCTGTAATATGTTAAAAGCTActatattttgtttctaaaaataaaagggTGTTATGTGGCTTTTGGCTGATCATGtactttataattaaataaacatcgCAGCAATCAGCTAGTTTGGGGCTGAAAGTAagaatgtatttaaattaacgttatatatgtttttttttatgcaaattgaTCATATGaccaagtgtaaacacacataGCATTGCTCCAGTTCAGAaggttcagttttatttatgattaaatatCTCCAATTTCTCTGAcacatatgtattttttttatgtttgacaCGAGTAATTAAAAtcccacagcaaaaaaaaacagtgcatgTATTGGTATAACAGTAAACCTAGTAAAGCTATGCTTAAATTTGACGCTGCATGAAGTTTACAGTAATGGCATTTGTAAGTTGTATtcctatcacagaaaaaaaccTTTCCCCTTGTGATGTGTCATTTTTAGTGAGCAGTGACATTCTAAAAGTGTTCTGACTTATTTTTCCCAACGTCTCCAtcacattttactgttttatcagCTTTGACTAGGGTTTTTGCTTTGTATATATAATGACCCAAAACTGTTGTAAACCAGTCTTAGGATTTTGGAATTGGCCTGTTTTTCCAACTTGGTGTGTGAGCAGGTTTTAACATTACTGTATTAAACTAAATCCAGTATAAGGTTTTTTGCCATCCTGTGCCTATTTTCAAAAACAGTACAGTT
>XM_022671393.1
cagtctgacacacacacacacacacacacatacacactgccaTCGCCAGAGAAAGGCAGCGGCAGCAGCTCCTTCTTTACTTCAGCAACATCTGCCCCTCCTGTAGCTCTCTGAGGGTCGCTCCTGGAGAGGAAGCAGAAGAGACGAGGCGCCCCCGCTGCTTTCTGaactcctctgtgtgtgtgatggcgGAGGACGGGCAGGTTTAGGTGGATTTTGGGCTGTTTTCTGGACTGTTTTGGACTGTCTTTGGACGCCGGTGTGAGGAGGGATATTATAGCGGCTCTGCTCTCAGACATGGATGCGCTGAAACTGCCCGCAGCTGCTCTCCTtcttctcctgctctctctgaaCAGCCCGGTCTCCTCCAACCAGTTCCCGGACTCCAAGCAgGCTCGAGAATGGGCAAACCACATAGAGGAGGACCTTCTGCAGCTGATTAATGCTGAGGTGGACATAGAGCACCTCACTAAGGTTTTTAATGATCTTGAAGACAAGTACAAAGTGGAGCATAACAATGCCCAGCAGCTGGTGGCCAACGCTGCCAGCAACATTGATAAACTGCTGGCCAACCGCTCTAAAGCTCTGGAGGCTCTGGCCACAGCTGCAGAAAAGTTGCAGGTGGAGCACCAGTGGAGAGACGATTTTGAGGAAGACTACAATCAATATTACAATGCAAAAGATGATACCTACCTCAATAATACTCTGGACTTCATAAAAGACCCAGCCTTTAAGCGCCTTGTGTCGTACAACAGTACAGCAGTTCATATCCCTACTGACATCTATGAAGGCTCCACTATTGTTCTAAATGAGTTAAACTGGACCCAAGCACTAGATGAAGTGTTTAAGAAAAATAAGGAGGAGGACCCCACACTGCTGTGGCAGGTGTTTGGCAGCGCTACTGGACTGGCTAGATACTTCCCAGCCTCTCCATGGATAGAAACAAAGAAAACGGCTGGTAAAATCGACCTGTATGATGTACGGAGGAGACCATGGTACATACAGGGTGCTGCCTCACCTAAGGACATGCTGATTCTGGTGGATGCGAGTGGGAGTGTGTCGGGACTGACGCTGAAGCTGATCCGCACTTCTGTTAGCGAGATGCTGGAGACTCTCTCTGATGACGATTACGTCAATGTCGTTTTTTTCAGCAATGAGGCCAAACCAGCGGCCTGCTTTCAGAACCTTGTCCAGGCCAACGTTCGCAACAAGAAGATCCTGAAGAAGGCAGTGCAGAATATCACAGCCAACGGCACCACCGACTACAAGAAAGGCTTCAAGATGGCCTTCGAGCAACTCGATGCGAAGAACAACAACACAAGAGCAAACTGCAATAAAATCATCATGCTCTTCACGGACGGAGGGGAAGATAGAGCGTCTGAGGTCTTTGAAGAGATGAACAAGGCCCGCAAGGTCCGCATCTTCACGTTCTCTGTGGGACAACACAATTATGATAAAGGACCTATCCAGTGGATGGCCTGCACCAATAAAGGATATTACTACGAGATTCCCTCCATCGGTGCCATCAGAATCAACACACAGGAGTATCTGGATGTGCTGGGAAGACCTATGGTAAAAGCTGACAAAGCAGCAAAGAAGGTGCAGTGGACCAATGTATATCAGGATGCACTGGAGCTTGGGCTGGTCATAACAGGAACACTTCCAGTGTTTAACAAGACTGGCATAAAAACTGTCAGGAACAAAcagCAACTGAGCAATGAAAATCAGCTTATACTGGGAGTGATGGCCATCGATGTGTCGTTAAACGACATCAAAAGACTGACTCCACGCTACACTTTTGGACCTAATGGATATTACTTTGCCATCGACCCCAATGGATACGTGCTGCTTCATCCCAACCTTCAACCAGAGaaaaacagtttCAGGAGCGgtggacaattaaaaaaaaaaaaaacccctttCTTGGATGCGGAGTTGGAAAACGAGATCAAAGTGGAGATCagaatgaaaatgataaaagCAGAGAAAGGCCAACAGACCATCTACACTCTGGTGAAGTCCCAGGATGAGCGTTATATAGACCAAGGCCTGAGAACATACACTTACGGTCCAGTCAACGGCACTGATTACAGcctTGCTTTAGTGCTTCCTGATTACAGCCAATACTACATCAAGGCTACCTTAGGAGACACCATCACCCAGGCCAAATCCTGGGCGCCCTTCAATGATTCTGAGGGACTTGtCTCGGAAAGCCTGCAGGTGGATAAATTTGAGGAGTACGGATATACTTTCATAGCTCCCAGAGAGTACTGCAATGACCTGAAACCGCAGAGTAGCAACAACACAGAATTCCTGATCGAGTTCAATAAGTACATTGACATGAAGACCCCCAACGATCCACAATGCAATGTGGATCTGGTGAATCGGTTGTTACTGGACGCTGGCATTACCTCCAAAATAGTGAAACACTGGACTGAACAGAATAGAACTGACAGAATCAGAGCTAAGTTTGTGGCCACAGATGGAGGCATCACCAGAGTTTATCCCACAAGTGCTGGATTTGAGTGGAGTGAAGAACCAGAGACATATAACTCCAGTTTCTACAAGAGAACTCTGGACAatgacatttatatttttacaccacCATTACCAGAAATCATTCCATCAGAAAACGGAAGCCGTTCTGCTGACTCTATTTTAGTGAGCAAAGCGGTAAATATTACCATCAAAGGAGCTACACTCAAACCAGCAGTGGTTGGTGCGAAAATAGACATCGTTAACTGGATGCAAAGCTTCACAAATGCTGCAGAGAAATCTAATTGTAATGATGAGATCTGTGGCTGCAAAAGAGATGATCCGaACATTGACTGTGTGCTGTTAGATGACGGGGGATTCTTAGTTATGTCCAATCAGAATGATTACATCAGTCAGattgGCCAGTTCTTCGGTGTGATTGACCCCATGCTGATGCTCAACTTGCTGAATGAGTCTCTGTTCTCCTTCAACAAAACCTACGACTACCAGGCGGTGTGTTTCCCTACCAAAGAAAACAGATCAGCTGCTGGCCTCAGATCAGTTTATGTGCCGACCATAGCAGATATACTAAATGTGGGCTGGTTGGCCTCTGCAGCAGCATGGTCAATACTGCAGCAGCTGTTTGTTAGCATAACGTTTCCTAATTTCCTGGAAGCAGCGGAGCCAGAAGACGACGCCATGGAGAAAGAAAGCTGCATCACTGAGCAGACTCAATACTTCTTTGCAAACACTGACAAAAGCTTCAAGGGAAGCCTAGAATGTGACAACTGCTCCAGGCAGTACATTGCTGAGAAGCTGGTGATGACCAATCTGGTGCTGATCATTGCAGATTCTAAGAAAACCTGCACGACTTGTCATGCAAAGCCCCTAACCCAGGCTGAGCAGCCCTcttcgGGGCCGGATCCCTGTGAATTAGCCAAGCACCCTAGATACCGGAAAGGTCCGGAAGTCTGCTTTGACAACAACGCAAATGAACGAGATGTTGACTGTGGCGGGGCATCCGGTCTGACTCCGCCCGTTTGGCTCATGGCCATCtttcagctgctgctgttctggCTCCTGAGTGGACTCGGACACTGCCCATCGTGACCTCAGCCTAGAGAAGCCCCGCCCCTTGATGACGCCAAACCCTAGACCGCATCCTGCCAcacaagtcttttttttatcgGAACCTTGGGCACCAGCGCGCCTGCTTACGACAAGAAAGCCTTGGACCCGGGAAGCTTAAGACTGATGAAGTGTTCGCTCTGTGTTGCCCTGTGAGTGACGGTGGGTCAGCAGATGATAAATGAGCTAAGACTTTTGACCCTTGGCCTCTGAGGCCGGCCTCGGCCCACGTGGGCAACAGGGTGGACAGCCTTGCCTTTACCCCAGCGAAACAGAGGTCCTCTACCCGTGTTCTACAATTACACCAGTCATGACTGATCTCGTCACTGCCAAATACAGTGCTCTCTCCTATGGGCGTGTGTCATGTCAATTTGATaagattaattaattttgtttcGTTGGTCTTCTTGAGCATCTTCTAGTGAATAGCTTCTCAAGGCTATCAAAATGTATCAAAAGTGTTTTGGTCATCAGTTTTAAAACTATACATTTTGTTATACAATTTGCCCATCTGGTTAGGCcgtaatttaaacttgtttaatatataaatcAGGAAAGATTGCTGAAATAAATCCTGATATAGACCTCTCAGGACATGCTGTCATTTTGCAGGACCCCATTAGCATCCAAATGCTTGGGTAGACCATGTTTTTGGAAATCACCCATAATTAATAACACGCTATAGAACAAACCAACAACGGCAAACTAACACTCCTGTACACTTTGCATCATAAAACTGGCAACCTTACTAAAATATTCATTGCTGACCATTGAGCCTTGTCAAGGGGCTTTAGTAGTACTGTAGTAGACTCCAATTTAAAAAAGTGTCTAGTCTTTTTCCATGGCATTTAAAGGTGCAGGGGTGTTagttgtcctgtaatcatgtttctgtaaagctgctttgtgccaacaccagttgtaaaaagcgctatacaaataaatttgatttgatttgagtttGGTTTAGTGCTTAATgagcatattattattaacaattgCTTAATTCATCGAATAAAACTATATTTGCAACGTTACTCTTCATTGTAATACTGTAACGAATGAAGCTGATTTTACACCAGAATCTTTGAGGCACACTGCAGTTTGCGCTTGTTACAGgaaatgtccaaatgtttgtggacacctattgtaatggatgcacTCAGCTATTTTCCCGGTAGAGGAGCATTGCCAGTAGAATAGTAGATATGTCTGATGGTCGATAtgagatatagagatataaaGACACCCAGCATTGAGCAGTAGAGCAGTGGAGCTATAGTAtcttctctggaatgatgcATCCAGTCCATCCAGTGCTTTTGGGTTGCGGAATTAGTTGGGGAATTGAGGCTGAGGTGGGGTGGTGTAACATTCAGTTAAATTGATTTTGAAGAAATTTTTGTGAAAGTTTGTACTAAAAAACCCATGTTTTCTGTATCTATTACGGTCctatattttgtaaaatgtagCTTTCTCActgaatttaca

Function

GO:

id name namespace
GO:0015085 calcium ion transmembrane transporter activity molecular_function

KEGG:

id description
ko04921 Oxytocin signaling pathway

RNA

RNA id representative length rna type GC content exon number start site end site
TU86603 False 2322 lncRNA 0.37 5 15778116 15817856
XM_022671393.1 True 5091 mRNA 0.46 40 15671306 15867795

Neighbor

gene id symbol gene type direction distance location
LOC103045938 LOC108432519 coding downstream 46958 15578874 ~ 15624348 (-)
snd1 snd1,LOC107738807,LOC107732977 coding downstream 116674 15270863 ~ 15554632 (-)
kin kin coding downstream 1581754 14080289 ~ 14089552 (-)
sfmbt2 sfmbt2 coding downstream 1673813 13922539 ~ 13997493 (-)
LOC103038708 NA coding downstream 1915824 13712234 ~ 13755482 (-)
akap14 NA coding upstream 57751 15925546 ~ 15927271 (-)
LOC111192960 NA coding upstream 479764 16347559 ~ 16351713 (-)
scaf11 NA coding upstream 563505 16431300 ~ 16450766 (-)
slc38a2 slc38a2,s38a2,LOC103028401,LOC106609517,LOC108274720 coding upstream 591945 16459740 ~ 16469357 (-)
LOC103027662 LOC108411501,LOC108275084,LOC107658982 coding upstream 661410 16529205 ~ 16577816 (-)
G64156 NA non-coding downstream 3279 15665176 ~ 15668027 (-)
G64085 NA non-coding downstream 611663 15058374 ~ 15059643 (-)
G64064 NA non-coding downstream 667429 15003669 ~ 15003877 (-)
G64063 NA non-coding downstream 671281 14999809 ~ 15000025 (-)
G64054 NA non-coding downstream 691349 14979722 ~ 14979957 (-)
LOC111192959 NA non-coding upstream 22627 15890422 ~ 15907327 (-)
G64214 NA non-coding upstream 93143 15960938 ~ 15961286 (-)
G64247 nrcam non-coding upstream 232628 16100423 ~ 16105219 (-)
G64273 NA non-coding upstream 272861 16140656 ~ 16141428 (-)
G64280 NA non-coding upstream 299268 16167063 ~ 16167373 (-)
G64060 NA other downstream 676474 14994164 ~ 14994832 (-)
LOC111192906 NA other downstream 678576 14990229 ~ 14992730 (-)
G64034 NA other downstream 885157 14785321 ~ 14786149 (-)
prkcq prkcq,LOC107748461,LOC107675981,LOC107555829 other downstream 1783438 13841193 ~ 13887868 (-)
LOC103025415 iqsec3,LOC107689235 other downstream 2643808 12805971 ~ 13027498 (-)
G64387 NA other upstream 717270 16585065 ~ 16585647 (-)
G64492 NA other upstream 1014540 16882335 ~ 16887903 (-)
LOC111192911 cyth3b,cyth3,LOC107556600,LOC106518738,LOC108239256,LOC107376516,LOC102303741,LOC108437157,LOC108258062 other upstream 1667501 17535296 ~ 17664561 (-)
LOC103043390 NA other upstream 1811019 17678814 ~ 17689312 (-)
G64886 NA other upstream 2060712 17928507 ~ 17931170 (-)

Expression


Co-expression Network