G64320 (pdzrn4,LOC107757222,LOC107581937,LOC107694264,LOC107725536,LOC107587183)


Basic Information

Item Value
gene id G64320
gene name pdzrn4,LOC107757222,LOC107581937,LOC107694264,LOC107725536,LOC107587183
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 16293718 ~ 16293968 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU86806
CTGTCCGACAGCAGAAAAGGGCAGATGTCAGGCACTGGTGGAGTAGCTGGTCTCATTTTGGCCAGAGCCATGATGTGCTCGAATGTGATGTCTGTCTGAGTACACAcatccaccacacacacctcctgCAGGTTGCCATGGGTACTAGCTGTGGGACCCCGCCGTAATACCTGGACAACGATGGGGTCCTTCCGCATCGCTTCCACAGCCACTTCATGTCCAGTTTTAGAAAAGTCTCGCCCATTTACCTG

Function

symbol description
pdzrn4 Is expressed in basal plate midbrain region; nervous system; and pharyngeal arch. Orthologous to human PDZRN4 (PDZ domain containing ring finger 4).

NR:

description
PREDICTED: PDZ domain-containing protein 4-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU86806 True 251 lncRNA 0.54 1 16293718 16293968

Neighbor

gene id symbol gene type direction distance location
akap14 NA coding downstream 366447 15925546 ~ 15927271 (-)
LOC103045938 LOC108432519 coding downstream 669370 15578874 ~ 15624348 (-)
snd1 snd1,LOC107738807,LOC107732977 coding downstream 739086 15270863 ~ 15554632 (-)
kin kin coding downstream 2204166 14080289 ~ 14089552 (-)
sfmbt2 sfmbt2 coding downstream 2296225 13922539 ~ 13997493 (-)
LOC111192960 NA coding upstream 53591 16347559 ~ 16351713 (-)
scaf11 NA coding upstream 137332 16431300 ~ 16450766 (-)
slc38a2 slc38a2,s38a2,LOC103028401,LOC106609517,LOC108274720 coding upstream 165772 16459740 ~ 16469357 (-)
LOC103027662 LOC108411501,LOC108275084,LOC107658982 coding upstream 235237 16529205 ~ 16577816 (-)
LOC103027149 LOC103027149 coding upstream 360145 16654113 ~ 16660507 (-)
G64313 NA non-coding downstream 113264 16176513 ~ 16180454 (-)
G64280 NA non-coding downstream 126345 16167063 ~ 16167373 (-)
G64273 NA non-coding downstream 152290 16140656 ~ 16141428 (-)
G64247 nrcam non-coding downstream 188499 16100423 ~ 16105219 (-)
G64214 NA non-coding downstream 332432 15960938 ~ 15961286 (-)
G64321 NA non-coding upstream 18163 16312131 ~ 16368390 (-)
G64380 NA non-coding upstream 195541 16489509 ~ 16489931 (-)
G64382 NA non-coding upstream 214968 16508936 ~ 16514868 (-)
G64418 zmp:0000000711,LOC108411497 non-coding upstream 352210 16646178 ~ 16648622 (-)
G64422 NA non-coding upstream 371053 16665021 ~ 16667239 (-)
LOC103027187 NA other downstream 425923 15671306 ~ 15867795 (-)
G64060 NA other downstream 1298886 14994164 ~ 14994832 (-)
LOC111192906 NA other downstream 1300988 14990229 ~ 14992730 (-)
G64034 NA other downstream 1507569 14785321 ~ 14786149 (-)
prkcq prkcq,LOC107748461,LOC107675981,LOC107555829 other downstream 2405850 13841193 ~ 13887868 (-)
G64387 NA other upstream 291097 16585065 ~ 16585647 (-)
G64492 NA other upstream 588367 16882335 ~ 16887903 (-)
LOC111192911 cyth3b,cyth3,LOC107556600,LOC106518738,LOC108239256,LOC107376516,LOC102303741,LOC108437157,LOC108258062 other upstream 1241328 17535296 ~ 17664561 (-)
LOC103043390 NA other upstream 1384846 17678814 ~ 17689312 (-)
G64886 NA other upstream 1634539 17928507 ~ 17931170 (-)

Expression


Co-expression Network