G64321


Basic Information

Item Value
gene id G64321
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 16312131 ~ 16368390 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU86807
TTCTCCctcgtttggtctcttgtgctcctgcccctctgttttcctgtcaagtgttcccagccatgtgcttgtgttgttgtttttgtctccaccatagctccgccccagccctgccctagctattagtgttctcacctgtgtcctgtttgtaaccccgccccctcgtcatcccagcccaggtgtttctcactcccctcctgtatttaagcccctctgtttgaatgttcagtgtcgagtcttttgtattttgtatcctgtatattttgtatcctgtatccgAGATCCTTAGTCTGTATGTATCCTTGCTGCCCGTATGTTTCctagtttcttagtctgtgtttcttagtttgTTATCccaagtcttgttgttttgcgttacccgtgttttatttgttttgatttatcttgtttgtttaaaaataaatatctttgcacttacgtcctcctccATCCCTCCGTCTCCCCTGTAACA
>TU86809
ccctcgTCATCccagcccaggtgtttctcactcccctcctgtatttaagcccctctgtttgaatgttcagtgtcgagtcttttgtattttgtatcctgtatattttgtatcctgtatccgAGATCCTTAGTCTGTATGTATCCTTGCTGCCCGTATGTTTCctagtttcttagtctgtgtttcttagtttgTTATCccaagtcttgttgttttgcgttacccgtgttttatttgttttgatttatcttgtttgtttaaaaataaatatctttgcacttacaaaaaaaaatt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU86807 True 472 lncRNA 0.45 2 16360895 16368390
TU86809 False 291 lncRNA 0.37 2 16312131 16361207

Neighbor

gene id symbol gene type direction distance location
akap14 NA coding downstream 384860 15925546 ~ 15927271 (-)
LOC103045938 LOC108432519 coding downstream 687783 15578874 ~ 15624348 (-)
snd1 snd1,LOC107738807,LOC107732977 coding downstream 757499 15270863 ~ 15554632 (-)
kin kin coding downstream 2222579 14080289 ~ 14089552 (-)
sfmbt2 sfmbt2 coding downstream 2314638 13922539 ~ 13997493 (-)
scaf11 NA coding upstream 62910 16431300 ~ 16450766 (-)
slc38a2 slc38a2,s38a2,LOC103028401,LOC106609517,LOC108274720 coding upstream 91350 16459740 ~ 16469357 (-)
LOC103027662 LOC108411501,LOC108275084,LOC107658982 coding upstream 160815 16529205 ~ 16577816 (-)
LOC103027149 LOC103027149 coding upstream 285723 16654113 ~ 16660507 (-)
LOC111192875 LOC108437882 coding upstream 327691 16696081 ~ 16707075 (-)
G64320 pdzrn4,LOC107757222,LOC107581937,LOC107694264,LOC107725536,LOC107587183 non-coding downstream 18163 16293718 ~ 16293968 (-)
G64313 NA non-coding downstream 131677 16176513 ~ 16180454 (-)
G64280 NA non-coding downstream 144758 16167063 ~ 16167373 (-)
G64273 NA non-coding downstream 170703 16140656 ~ 16141428 (-)
G64247 nrcam non-coding downstream 206912 16100423 ~ 16105219 (-)
G64380 NA non-coding upstream 121119 16489509 ~ 16489931 (-)
G64382 NA non-coding upstream 140546 16508936 ~ 16514868 (-)
G64418 zmp:0000000711,LOC108411497 non-coding upstream 277788 16646178 ~ 16648622 (-)
G64422 NA non-coding upstream 296631 16665021 ~ 16667239 (-)
LOC111192962 NA non-coding upstream 343683 16712073 ~ 16714049 (-)
LOC103027187 NA other downstream 444336 15671306 ~ 15867795 (-)
G64060 NA other downstream 1317299 14994164 ~ 14994832 (-)
LOC111192906 NA other downstream 1319401 14990229 ~ 14992730 (-)
G64034 NA other downstream 1525982 14785321 ~ 14786149 (-)
prkcq prkcq,LOC107748461,LOC107675981,LOC107555829 other downstream 2424263 13841193 ~ 13887868 (-)
G64387 NA other upstream 216675 16585065 ~ 16585647 (-)
G64492 NA other upstream 513945 16882335 ~ 16887903 (-)
LOC111192911 cyth3b,cyth3,LOC107556600,LOC106518738,LOC108239256,LOC107376516,LOC102303741,LOC108437157,LOC108258062 other upstream 1166906 17535296 ~ 17664561 (-)
LOC103043390 NA other upstream 1310424 17678814 ~ 17689312 (-)
G64886 NA other upstream 1560117 17928507 ~ 17931170 (-)

Expression


Co-expression Network