LOC111192962


Basic Information

Item Value
gene id LOC111192962
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 16712073 ~ 16714049 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU86915
GCATGTGCAGACAGGTCCAGGGGGTGGGGTTAGTTGAGTTCAGGCTGTGTTCGCGGGCTGCAGCTCTGTGTTGAGCTCTCCAGAAATAATGGGTTTATTTTGTGCAAATTCTGTATTTTATCTCTTTAATTCTGGTATTAAAACAGCCTTTATTGGGTCTGTATTCCGCTGAAATGCCCTGAGTCTGAGCGGAGCTGACTAACCCCACTGGAAGTGGAAGgagAAGAATCTGAAATCATGCGCATTTTAGCTCAGTGCCACGTGGACAGAGCAAGGCCCAATCAGGAGGAATTCTGTAAGAGATAAGGAATTATAGAAGTGAAGAAGTATGCCCGGTCCGGACTCACCTGAGGCAGGGTCTATTGGACCTAAAGAAGAGGAAGGTGGAATTGCTGGTATTATGGTGTTGCTGTGACACTACAGGATTGTTGATTCATacaataaaacttatttttaagcATA
>XR_002650193.1
CAGACAGGTCCAGGGGGTGGGGTTAGTTGAGTTCAGGCTGTGTTCGCGGGCTGCAGCTCTGTGTTGAGCTCTCCAGAAATAATGGGTTTATTTTGTGCAAATTCTGTATTTTATCTCTTTAATTCTGGTATTAAAACAGCCTTTATTGGGTCTGTATTCCGCTGAAATGCCCTGAGTCTGAGCGGAGCTGACTAACCCCACTGGAAGTGGAAGgagAAGAATCTGAAATCATGCGCATTTTAGCTCAGTGCCACGTGGACAGAGCAAGGCCCAATCAGGAGGAATTCTGTAAGAGATAAGGAATTATAGAAGTGAAGAAGTATGCCCGGTCCGGACTCACCTGAGGCAGGGTCTATTGGACCTAAAGAAGAGGAAGGTGGAATTGCTGGTATTATGGTGTTGCTGTGACACTACAGGATTGTTGATTCATacaataaaacttatttttaagcATATACTTTAAA

Function

GO: NA

KEGG:

id description
ko00240 Pyrimidine metabolism

RNA

RNA id representative length rna type GC content exon number start site end site
TU86915 False 462 lncRNA 0.45 4 16712082 16714049
XR_002650193.1 True 464 lncRNA 0.44 4 16712073 16714042

Neighbor

gene id symbol gene type direction distance location
LOC111192875 LOC108437882 coding downstream 4998 16696081 ~ 16707075 (-)
LOC103027149 LOC103027149 coding downstream 51566 16654113 ~ 16660507 (-)
LOC103027662 LOC108411501,LOC108275084,LOC107658982 coding downstream 134257 16529205 ~ 16577816 (-)
slc38a2 slc38a2,s38a2,LOC103028401,LOC106609517,LOC108274720 coding downstream 242716 16459740 ~ 16469357 (-)
scaf11 NA coding downstream 261307 16431300 ~ 16450766 (-)
LOC103039070 NA coding upstream 181531 16895580 ~ 16945665 (-)
LOC103042974 LOC108437161 coding upstream 331465 17045514 ~ 17096825 (-)
cep112 cep112 coding upstream 389246 17103295 ~ 17307076 (-)
stk19 stk19,LOC106601743,LOC106601674 coding upstream 1007080 17721129 ~ 17731699 (-)
LOC111192974 tvp23b,LOC108437154,LOC105899270 coding upstream 1068703 17782752 ~ 17797809 (-)
G64422 NA non-coding downstream 44834 16665021 ~ 16667239 (-)
G64418 zmp:0000000711,LOC108411497 non-coding downstream 63451 16646178 ~ 16648622 (-)
G64382 NA non-coding downstream 197205 16508936 ~ 16514868 (-)
G64380 NA non-coding downstream 222142 16489509 ~ 16489931 (-)
G64321 NA non-coding downstream 343683 16312131 ~ 16368390 (-)
G64479 NA non-coding upstream 49161 16763210 ~ 16766262 (-)
G64485 NA non-coding upstream 90512 16804561 ~ 16890783 (-)
G64491 NA non-coding upstream 163567 16877616 ~ 16892465 (-)
G64505 NA non-coding upstream 191354 16905403 ~ 16906021 (-)
G64508 NA non-coding upstream 234540 16948589 ~ 16948788 (-)
G64387 NA other downstream 126426 16585065 ~ 16585647 (-)
LOC103027187 NA other downstream 844278 15671306 ~ 15867795 (-)
G64060 NA other downstream 1717241 14994164 ~ 14994832 (-)
LOC111192906 NA other downstream 1719343 14990229 ~ 14992730 (-)
G64034 NA other downstream 1925924 14785321 ~ 14786149 (-)
G64492 NA other upstream 168286 16882335 ~ 16887903 (-)
LOC111192911 cyth3b,cyth3,LOC107556600,LOC106518738,LOC108239256,LOC107376516,LOC102303741,LOC108437157,LOC108258062 other upstream 821247 17535296 ~ 17664561 (-)
LOC103043390 NA other upstream 964765 17678814 ~ 17689312 (-)
G64886 NA other upstream 1214458 17928507 ~ 17931170 (-)
LOC111192976 NA other upstream 1910826 18624875 ~ 18712520 (-)

Expression


Co-expression Network