G64422


Basic Information

Item Value
gene id G64422
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 16665021 ~ 16667239 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU86933
GTTAATTGTGCCGCTATAATACGACTTGACTTAATATGACTTTCCCTGTGGGATCTGTCTTACACCTAGCAATAATAGTTATATTTCTTGTGTGTTAATGTAGGGAATGTTATGTTCCCTGAGTAGGGCACTGTGGCATTAAAAATACTTGTTTATCCACATTTTAATCTGTCCTAGCAGATATGAGGTGTTGTACAGGCATATTAAGACTGCTTCTACAGCTCAGTAAATGTTGCCATCTACAGGCTGCATATTGCAACTGCGGCTTTTTGAGATGGACAGTAAATCCCAAGACGTTAATTTTTTACGTCTGTACACGTAATATATCCACGTCTGTACAGGTGAAAAAAAGCACGTGATGTACAGACGGCATAAATTTACGCCTCCACACGTAAAAAGATTACGTCTGTACACGTAAAAAGATAACGTCTTTA
>TU86934
GGGAAAGAAACGCCTCCACGCGTAAAAATATGACGCGTCCACACGTAAAAAAATCACGTGTACAGGCGGTAAAACTGTTCGTGTATACACGTTTTGGCATCTAACATCCAATCGGTAAACGCGCCTATGCATACATTTGCATTGTAATAAGGCAGCCTGACAACACATGATGTCATGCAACGTATTGTATTCCATATTCATAAGACGCTTACGTGGGTTACAACGCAGTGTCTACGTACCGTGACATAGCcccatacatactcatacacactctgcaCGCAAGGTCCACATAACTGAAACGTTGTAATCATGTGTCTATGATGTACCCCCTATTTCACATGATGTAACCCCCGCCATTTTATATCCATAGTGTTTACCCTGCCTTTAGGTCAGTGCAATCATGGCTCTGCAAAATTTTCTGTTGAATTGTAGAACAGTTTTGCTGACTGCACAAGGCTTGCAATGTCAGATCATGTTCAATCAGATGCTGAGCACATACTGACAAGGTTCCCTGAGTAGGGCACTGTGGCATTAAAAATACTTGTTTATCCACATTTTAATCTGTCCTAGCAGATATGAGGTGTTGTACAGGCATATTAAGACTGCTTCTACAGCTCAGTAAATGTTGCCATCTACAGGCTGCATATTGCAACTGCGGCTTTTTGAGATGGACAGTAAATCCCAAGACGTTAATTTTTTACGTCTGTACACGTAATATATCCACGTCTGTACAGGTGAAAAAAAGCACGTGATGTACAGACGGCATAAATTTACGCCTCCACACGTAAAAAGATTACGTCTGTACACGTAAAAAGATAACGTCTTTA
>TU86935
GGGAAAGAAACGCCTCCACGCGTAAAAATATGACGCGTCCACACGTAAAAAAATCACGTGTACAGGCGGTAAAACTGTTCGTGTATACACGTTTTGGCATCTAACATCCAATCGGTAAACGCGCCTATGCATACATTTGCATTGTAATAAGGCAGCCTGACAACACATGATGTCATGCAACGTATTGTATTCCATATTCATAAGACGCTTACGTGGGTTACAACGCAGTGTCTACGTACCGTGACATAGCcccatacatactcatacacactctgcaCGCAAGGTCCACATAACTGAAACGTTGTAATCATGTGTCTATGATGTACCCCCTATTTCACATGATGTAACCCCCGCCATTTTATATCCATAGTGTTTACCCTGCCTTTAGGTCAGTGCAATCATGGCTCTGCAAAATTTTCTGTTGAATTGTAGAACAGTTTTGCTGACTGCACAAGGCTTGCAATGTCAGATCATGTTCAATCAGATGCTGAGCACATACTGACAAGGTTCCCTGAGTAGGGCACTGTGGCATTAAAAATACTTGTTTATCCACATTTTAATCTGTCCTAGCAGATATGAGGTGTTGTACAGGCATATTAAGACTGCTTCTACAGCTCAGTAAATGTTGCCATCTACAGGCTGCATATTGCAACTGCGGCTTTTTGAGATGGACAGTAAATCCCAAGACGTTAATTTTTTACGTCTGTACACGTAATATATCCACGTCTGTACAGGTGAAAAAAAGCACGTGATGTACAGACGGCATAAATTTACGCCTCCACACGTAAAAAGATTACGTCTGTACACGTAAAAAGATAACGTCTTTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU86933 False 434 lncRNA 0.38 2 16665021 16666355
TU86934 True 827 lncRNA 0.42 2 16665021 16667239
TU86935 False 827 lncRNA 0.42 2 16665021 16667239

Neighbor

gene id symbol gene type direction distance location
LOC103027149 LOC103027149 coding downstream 4514 16654113 ~ 16660507 (-)
LOC103027662 LOC108411501,LOC108275084,LOC107658982 coding downstream 87205 16529205 ~ 16577816 (-)
slc38a2 slc38a2,s38a2,LOC103028401,LOC106609517,LOC108274720 coding downstream 195664 16459740 ~ 16469357 (-)
scaf11 NA coding downstream 214255 16431300 ~ 16450766 (-)
LOC111192960 NA coding downstream 313308 16347559 ~ 16351713 (-)
LOC111192875 LOC108437882 coding upstream 28842 16696081 ~ 16707075 (-)
LOC103039070 NA coding upstream 228341 16895580 ~ 16945665 (-)
LOC103042974 LOC108437161 coding upstream 378275 17045514 ~ 17096825 (-)
cep112 cep112 coding upstream 436056 17103295 ~ 17307076 (-)
stk19 stk19,LOC106601743,LOC106601674 coding upstream 1053890 17721129 ~ 17731699 (-)
G64418 zmp:0000000711,LOC108411497 non-coding downstream 16399 16646178 ~ 16648622 (-)
G64382 NA non-coding downstream 150153 16508936 ~ 16514868 (-)
G64380 NA non-coding downstream 175090 16489509 ~ 16489931 (-)
G64321 NA non-coding downstream 296631 16312131 ~ 16368390 (-)
G64320 pdzrn4,LOC107757222,LOC107581937,LOC107694264,LOC107725536,LOC107587183 non-coding downstream 371053 16293718 ~ 16293968 (-)
LOC111192962 NA non-coding upstream 44834 16712073 ~ 16714049 (-)
G64479 NA non-coding upstream 95971 16763210 ~ 16766262 (-)
G64485 NA non-coding upstream 137322 16804561 ~ 16890783 (-)
G64491 NA non-coding upstream 210377 16877616 ~ 16892465 (-)
G64505 NA non-coding upstream 238164 16905403 ~ 16906021 (-)
G64387 NA other downstream 79374 16585065 ~ 16585647 (-)
LOC103027187 NA other downstream 797226 15671306 ~ 15867795 (-)
G64060 NA other downstream 1670189 14994164 ~ 14994832 (-)
LOC111192906 NA other downstream 1672291 14990229 ~ 14992730 (-)
G64034 NA other downstream 1878872 14785321 ~ 14786149 (-)
G64492 NA other upstream 215096 16882335 ~ 16887903 (-)
LOC111192911 cyth3b,cyth3,LOC107556600,LOC106518738,LOC108239256,LOC107376516,LOC102303741,LOC108437157,LOC108258062 other upstream 868057 17535296 ~ 17664561 (-)
LOC103043390 NA other upstream 1011575 17678814 ~ 17689312 (-)
G64886 NA other upstream 1261268 17928507 ~ 17931170 (-)
LOC111192976 NA other upstream 1957636 18624875 ~ 18712520 (-)

Expression


Co-expression Network