G64427


Basic Information

Item Value
gene id G64427
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 16727032 ~ 16782114 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU86941
atgcatcttggcatcatgttctcctccaccagtcttacacactgcttttttttttcagagctgtattttcacACATTGAAAAAGGAAGCTAATTTCCGTGAAATGCAGCCCACCTAGGAAGCAGCCTAGACTTTGGGAAGCAGCTAGTGAGTTTTGTGTGTATCACCGCTTTTAAGAGGgtgattaaaagagaaaaatattgctattttaatttgaagatgatatattttattgttatagtCTTATTTTCTCAGAACTGACTTATTCTGTTTCTTGTCCAGAAAACATCATGTAATCCCAGTTAACCGTGTCATAATttggaaatgaataaaatgaataatgtttGGTTGCACAATTGTGTATCGTTATGTAATGTCATGACTCCAAGAATTAATGACAATTAAATGATGCTACAA

Function

GO: NA

KEGG:

id description
ko04710 Circadian rhythm

RNA

RNA id representative length rna type GC content exon number start site end site
TU86941 True 416 lncRNA 0.34 2 16727032 16782114

Neighbor

gene id symbol gene type direction distance location
LOC103026270 zmp:0000000711,LOC108411497,LOC108275404 coding upstream 75374 16615571 ~ 16651658 (+)
LOC103047366 LOC108415391 coding upstream 412033 16218828 ~ 16314999 (+)
LOC103046856 LOC108432562,LOC108279529,LOC107757284,LOC107581848 coding upstream 585633 16112859 ~ 16141399 (+)
LOC103027800 LOC108432561 coding upstream 625508 15998201 ~ 16101524 (+)
LOC103046551 LOC108432559 coding upstream 773100 15923726 ~ 15953932 (+)
LOC103035087 mafga,LOC107739593,LOC107556599,LOC107729585,LOC107701907 coding downstream 1799 16783913 ~ 16811230 (+)
LOC111192909 si:ch73-374l24.1,LOC108437159,LOC108259727,LOC107556610,LOC107698783 coding downstream 526951 17309065 ~ 17556553 (+)
LOC111192910 cacng5b,LOC108437158,LOC107556612,LOC107698772,LOC107729207,LOC107664435 coding downstream 786685 17568799 ~ 17582128 (+)
LOC111192975 rac1,RAC1,LOC105898786,LOC108437155,LOC106601744,LOC107664344 coding downstream 908092 17690206 ~ 17702915 (+)
LOC111192980 rac1,RAC1,LOC105898786,LOC108437155,LOC106601744,LOC107664344 coding downstream 925856 17707970 ~ 17719858 (+)
G64403 NA non-coding upstream 19936 16695940 ~ 16707096 (+)
G64393 NA non-coding upstream 117819 16608857 ~ 16609213 (+)
G64362 NA non-coding upstream 194249 16491186 ~ 16532783 (+)
G64291 NA non-coding upstream 294620 16377660 ~ 16432412 (+)
G64292 NA non-coding upstream 358638 16360903 ~ 16368394 (+)
G64462 NA non-coding downstream 115436 16897550 ~ 16904677 (+)
G64509 NA non-coding downstream 170467 16952581 ~ 16952839 (+)
G64511 NA non-coding downstream 187422 16969536 ~ 16969896 (+)
G64513 NA non-coding downstream 221535 17003649 ~ 17003848 (+)
G64515 NA non-coding downstream 257853 17039967 ~ 17042012 (+)
G64289 NA other upstream 284583 16439220 ~ 16442449 (+)
arid2 arid2,LOC107707985,LOC107555896 other upstream 300409 16395326 ~ 16426623 (+)
G64015 NA other upstream 1981950 14744735 ~ 14745082 (+)
gata3 gata3,LOC107555822 other upstream 2484798 14167229 ~ 14242234 (+)
LOC111192955 NA other upstream 3565665 13156226 ~ 13161367 (+)
LOC103030423 pcyt2,LOC108437168,LOC108277112,LOC107701914,LOC105013038,LOC107576708,LOC107729574,LOC106601930 other downstream 51176 16833290 ~ 16888195 (+)
G64449 NA other downstream 90973 16873087 ~ 16875941 (+)
G64698 rac1,RAC1,LOC105898786,LOC108437155,LOC106601744,LOC107664344 other downstream 908095 17690209 ~ 17719912 (+)
G64990 si:dkey-282h22.5,LOC108261121 other downstream 1774014 18556128 ~ 18623499 (+)
LOC103045528 NA other downstream 2441095 19223209 ~ 19278071 (+)

Expression


Co-expression Network