G64479


Basic Information

Item Value
gene id G64479
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 16763210 ~ 16766262 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU87006
ggaaaagaaaaaacaaaataaattataaaattataaaatgatcCGTTAAGAACATGACACTACATATAGAGTGACAATTTAATGTATGAATATTTTCTCATTAATGCATTGAAAATGTTGagaaaatgttaatatgtgCTCAAATGTAATCAATAGTGTTAGCAGAAAAGAGGGGACATGTCTGTAGGGCAAGTCTTtttatcctaaaaaaaaaaaaaaaaaaaaaaaaaaattacacaccaTGCTTTTCCATTCGTCATTTATCTTACATGTATCGGCAGACGCTTGcttaacacacactctcattcaatgctgtagttttttttacatttttcctacataataaattaatagtGAAGTTAtttagactatgaaggaacacataaggtcCTTTGGtcgttcctgatgagtgccagttccatcattataacgtTTTTGACTGtcttttttgcgactgcacttgaggaacttttcaaagttcttaaaatcgACTTTCAgactgactgatcttcatttcttaaagtcattgctttattttctttacttagttgagcagttcttgGTTGTTTATGGCATATCTCGCTGTGGGATATCGACAactcacctggctgctctctaaaacacatttatcacGAGAAAAACAAGGCAGAACTAAACGCACACTAGAACTAGCGATGTCCATGctagagaatctctatagaggagaatacgcacttaaagtgagtctaaaatgaatgggttcatatggaGCAACTGAGTAAAGTCAGATTTTTTAGCTTCATTTTACCCCATTCATAGAAGACTCACTCGAGAGCGccctctagagtttaacagaAAGTGGTCAGACTTTTCATAAATGGCTCTGGTCATGCAAAAGATTCTGAATCGGGTTGGACATGTggttttctctttatctttctccaTAATCTCACTGATTCACAGTCTCAGACTGGATCAGATGTTTAGCATGCAAGATATTGGCCAGGTGATCACTTTGCGACTTCCCGATTTCCCTCAGAGTAGAGGTTTTTGTCGGTAATAAACAACAAACTATTGGCGACTAAAAAACTGGGTTTAAATCGTGTATTGTTAACCCGGCATAAGGCTACAGCATGGGCTACGGCATAGGCACGACTTAAGATCTATCcggtgattttattcctgtccagaacgaccatgtacgtgttttctcagatgtcctctgagataaaaaattacaggctgaattctctactgtttttctctgaactctttcCGTGCTCCTCCTGTAATTTtaatcccgtccggacgcacatctctaaGTTTTGtttcctcgcgtttaataaaatagctatttgtccactgccgcgcaccgtaattacactttgggcgcgctccgtttccatggagatccacgtactgtaaacacaacagtgagtggaaatggaggagctactgaacgcaatgtcatgtgaccgagaaaacctaaaaaaaaccctcactggtcctcctgttttttcaattgcagttcggatgcaggagttttatcagtTTATCTTTAAAAGAGTCTCTGAATAGAATCTGCctttaaattaaacacacacattcattcattcattcattcatcagaAATATCAACTTTaaatgagctaaaaaaaaaaaacgataaacTTGATTTGCTTGAAATTTCCCAcgacattattaaaaaaaaaaaaaaaaaaaaaaaactcccattGGATTCAACAGCGGCCAAGAGCCAACAGCAGCATAGCGACAGGCTAACGATACCCTCACAACCTGACCTCACAGCCAAGCCACACAGAGCACAGTGAGATTTAAAAAGGCACGGCGGCCACACGGACTGATTATCACCCATCAAAACacgttaaaaaatatatatatacatatatactcgACGGTGAGCTGTTTCCACCGAGTATCACGTATCAAATATCACGCATCACGCACGGAGACATTGCACAGTAGAATTACTCTCGACCACTTCAAGTCTTTTTATAACAAAATTAGTCCTTGCTTTGCTTGCTTTACACAGACACACGTGAGCATCACAGTACTCAGCCTTTacgatacttttttaaaaaatgtccttTGTATAAAATAAGGGCGAAAAGaataacaaaaaactaaaaaataataatattaataatattaattcgATTCAAAATAGTGATTCGAATTCAGGCATCCTCCACAGCCCAGCTTCACCAGGAATCACCAGGCAGCTCTGAAAAGAGCTTTTGTGtctaaaatagttaaaaatattaagaaataataagaaataataagaaataaggcACTTAGGAAGGGACGAGGGGCGGTGGCTCCTGTGGAGACACGGCCGAGCACTGCAGGCTCGGACCACGCCACCTCATGGAGGCCAAACGCTGGAATGTGAATGTGTCTCAGAGATGTTTCTGCAGTCGAGACGGATTACAGAGCGACGTCCTCCTGTCTGGGTTCCACAGGTGGAGCAGGAAGCTGTGCAGGTAGCTGTGCAGGTAGCTCTGTAGAAGACTCTGCAGCAGATCTGGACGGTTCATTTTGATCCGATATTAAAGGGCAGTCCAGGTTTGCTGGATTCGGATTCGCCGGCTGTGTGGATGGAGATGGTTCCTGTATCTCAGGAGGTTTGGGCTCAGGCTGTGAGTGAACAGTCCTGCAGATCAGCTCAGAGCTGTGGTAGTAGGGCAGGAACAGGCGCTCCTGGGCGCACAGGCGCATGGCCAGGTGTGTGTGCAGCAGCAGGTGAGGGAAGCGGGAGGTGAAGTAGGAGACGAAGTCGTCCGGGATGGAGCCCAACGTCTCCTGGACTTCCTGCGGTAATTCCCTGTAATGGT
>TU87007
ggaaaagaaaaaacaaaataaattataaaattataaaatgatcCGTTAAGAACATGACACTACATATAGAGTGACAATTTAATGTATGAATATTTTCTCATTAATGCATTGAAAATGTTGagaaaatgttaatatgtgCTCAAATGTAATCAATAGTGTTAGCAGAAAAGAGGGGACATGTCTGTAGGGCAAGTCTTtttatcctaaaaaaaaaaaaaaaaaaaaaaaaaaattacacaccaTGCTTTTCCATTCGTCATTTATCTTACATGTATCGGCAGACGCTTGcttaacacacactctcattcaatgctgtagttttttttacatttttcctacataataaattaatagtGAAGTTAtttagactatgaaggaacacataaggtcCTTTGGtcgttcctgatgagtgccagttccatcattataacgtTTTTGACTGtcttttttgcgactgcacttgaggaacttttcaaagttcttaaaatcgACTTTCAgactgactgatcttcatttcttaaagtcattgctttattttctttacttagttgagcagttcttgGTTGTTTATGGCATATCTCGCTGTGGGATATCGACAactcacctggctgctctctaaaacacatttatcacGAGAAAAACAAGGCAGAACTAAACGCACACTAGAACTAGCGATGTCCATGctagagaatctctatagaggagaatacgcacttaaagtgagtctaaaatgaatgggttcatatggaGCAACTGAGTAAAGTCAGATTTTTTAGCTTCATTTTACCCCATTCATAGAAGACTCACTCGAGAGCGccctctagagtttaacagaAAGTGGTCAGACTTTTCATAAATGGCTCTGGTCATGCAAAAGATTCTGAATCGGGTTGGACATGTggttttctctttatctttctccaTAATCTCACTGATTCACAGTCTCAGACTGGATCAGATGTTTAGCATGCAAGATATTGGCCAGGTGATCACTTTGCGACTTCCCGATTTCCCTCAGAGTAGAGGTTTTTGTCGGTAATAAACAACAAACTATTGGCGACTAAAAAACTGGGTTTAAATCGTGTATTGTTAACCCGGCATAAGGCTACAGCATGGGCTACGGCATAGGCACGACTTAAGATCTATCcggtgattttattcctgtccagaacgaccatgtacgtgttttctcagatgtcctctgagataaaaaattacaggctgaattctctactgtttttctctgaactctttcCGTGCTCCTCCTGTAATTTtaatcccgtccggacgcacatctctaaGTTTTGtttcctcgcgtttaataaaatagctatttgtccactgccgcgcaccgtaattacactttgggcgcgctccgtttccatggagatccacgtactgtaaacacaacagtgagtggaaatggaggagctactgaacgcaatgtcatgtgaccgagaaaacctaaaaaaaaccctcactggtcctcctgttttttcaattgcagttcggatgcaggagttttatcagtTTATCTTTAAAAGAGTCTCTGAATAGAATCTGCctttaaattaaacacacacattcattcattcattcatcagaAATATCAACTTTaaatgagctaaaaaaaaacgataaacTTGATTTGCTTGAAATTTCCCAcgacattattaaaaaaaaaaaaaaaaaaaaaaaactcccattGGATTCAACAGCGGCCAAGAGCCAACAGCAGCATAGCGACAGGCTAACGATACCCTCACAACCTGACCTCACAGCCAAGCCACACAGAGCACAGTGAGATTTAAAAAGGCACGGCGGCCACACGGACTGATTATCACCCATCAAAACacgttaaaaaatatatatatacatatatactcgACGGTGAGCTGTTTCCACCGAGTATCACGTATCAAATATCACGCATCACGCACGGAGACATTGCACAGTAGAATTACTCTCGACCACTTCAAGTCTTTTTATAACAAAATTAGTCCTTGCTTTGCTTGCTTTACACAGACACACGTGAGCATCACAGTACTCAGCCTTTacgatacttttttaaaaaatgtccttTGTATAAAATAAGGGCGAAAAGaataacaaaaaactaaaaaataataatattaataatattaattcgATTCAAAATAGTGATTCGAATTCAGGCATCCTCCACAGCCCAGCTTCACCAGGAATCACCAGGCAGCTCTGAAAAGAGCTTTTGTGtctaaaatagttaaaaatattaagaaataataagaaataataagaaataaggcACTTAGGAAGGGACGAGGGGCGGTGGCTCCTGTGGAGACACGGCCGAGCACTGCAGGCTCGGACCACGCCACCTCATGGAGGCCAAACGCTGGAATGTGAATGTGTCTCAGAGATGTTTCTGCAGTCGAGACGGATTACAGAGCGACGTCCTCCTGTCTGGGTTCCACAGGTGGAGCAGGAAGCTGTGCAGGTAGCTGTGCAGGTAGCTCTGTAGAAGACTCTGCAGCAGATCTGGACGGTTCATTTTGATCCGATATTAAAGGGCAGTCCAGGTTTGCTGGATTCGGATTCGCCGGCTGTGTGGATGGAGATGGTTCCTGTATCTCAGGAGGTTTGGGCTCAGGCTGTGAGTGAACAGTCCTGCAGATCAGCTCAGAGCTGTGGTAGTAGGGCAGGAACAGGCGCTCCTGGGCGCACAGGCGCATGGCCAGGTGTGTGTGCAGCAGCAGGTGAGGGAAGCGGGAGGTGAAGTAGGAGACGAAGTCGTCCGGGATGGAGCCCAACGTCTCCTGGACTTCCTGCGGTAATTCCCTGTAATGGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU87006 True 2837 lncRNA 0.41 2 16763210 16766262
TU87007 False 2830 lncRNA 0.41 2 16763210 16766262

Neighbor

gene id symbol gene type direction distance location
LOC111192875 LOC108437882 coding downstream 56135 16696081 ~ 16707075 (-)
LOC103027149 LOC103027149 coding downstream 102703 16654113 ~ 16660507 (-)
LOC103027662 LOC108411501,LOC108275084,LOC107658982 coding downstream 185394 16529205 ~ 16577816 (-)
slc38a2 slc38a2,s38a2,LOC103028401,LOC106609517,LOC108274720 coding downstream 293853 16459740 ~ 16469357 (-)
scaf11 NA coding downstream 312444 16431300 ~ 16450766 (-)
LOC103039070 NA coding upstream 129318 16895580 ~ 16945665 (-)
LOC103042974 LOC108437161 coding upstream 279252 17045514 ~ 17096825 (-)
cep112 cep112 coding upstream 337033 17103295 ~ 17307076 (-)
stk19 stk19,LOC106601743,LOC106601674 coding upstream 954867 17721129 ~ 17731699 (-)
LOC111192974 tvp23b,LOC108437154,LOC105899270 coding upstream 1016490 17782752 ~ 17797809 (-)
LOC111192962 NA non-coding downstream 49161 16712073 ~ 16714049 (-)
G64422 NA non-coding downstream 95971 16665021 ~ 16667239 (-)
G64418 zmp:0000000711,LOC108411497 non-coding downstream 114588 16646178 ~ 16648622 (-)
G64382 NA non-coding downstream 248342 16508936 ~ 16514868 (-)
G64380 NA non-coding downstream 273279 16489509 ~ 16489931 (-)
G64485 NA non-coding upstream 38299 16804561 ~ 16890783 (-)
G64491 NA non-coding upstream 111354 16877616 ~ 16892465 (-)
G64505 NA non-coding upstream 139141 16905403 ~ 16906021 (-)
G64508 NA non-coding upstream 182327 16948589 ~ 16948788 (-)
G64510 NA non-coding upstream 186326 16952588 ~ 16952870 (-)
G64387 NA other downstream 177563 16585065 ~ 16585647 (-)
LOC103027187 NA other downstream 895415 15671306 ~ 15867795 (-)
G64060 NA other downstream 1768378 14994164 ~ 14994832 (-)
LOC111192906 NA other downstream 1770480 14990229 ~ 14992730 (-)
G64034 NA other downstream 1977061 14785321 ~ 14786149 (-)
G64492 NA other upstream 116073 16882335 ~ 16887903 (-)
LOC111192911 cyth3b,cyth3,LOC107556600,LOC106518738,LOC108239256,LOC107376516,LOC102303741,LOC108437157,LOC108258062 other upstream 769034 17535296 ~ 17664561 (-)
LOC103043390 NA other upstream 912552 17678814 ~ 17689312 (-)
G64886 NA other upstream 1162245 17928507 ~ 17931170 (-)
LOC111192976 NA other upstream 1858613 18624875 ~ 18712520 (-)

Expression


Co-expression Network