G64485


Basic Information

Item Value
gene id G64485
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 16804561 ~ 16890783 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU87015
tataaatataaaataaaggaaGCTgccaaacatacagtatatatacaatatataacaaCAGTACATCAATAACTTCGCCACACCCGAGAATGACTAACTGCGTGGTTCAAATCCAACCACAGTTCTTCTTATAGAGGAATACCTAATATCACTCCTGTATCTACAGATTGCAAAAAAGTACAATGATTTAATCCATAAATAGTTACAGTTCACCCATTTTTCTTACCGCATTTGATACAAAgtactgaaataaatatatttatatatatatatattattacaacCCATACAGTAGATAAAATCGACCGAGACGACATTCTATCAATGTAATAATTCACCGATCACCACCTGATACACTTCATagctttattttcttcatttttattttattttagacgAAAAACTATTCGTAGCCACGGAGAAACCTGCTCATCGACGTACGACAACATGATGGACGAAGCCTAATCAGCCTACCTAACGCTGGTACAACATACTGGTACTGTCACACAAGTGCTGATTGATCAAGTTACTGTATATCGGCCCTTCCAGTCCTTTTTAAAAGcccttctctcttttcctctcttattTAAGAACAATGGAATGGGTCAAAGACTTTTTGATGCATACTCGgaacaaaacaaagcaaaacgAAAACCCTCGGAACAAAAGAAGAACAGCAGCCCCCCACGGCGCCGCCGGGAAGCCCGGTTCTTGATCGATTGGGCGACAAAACGATTTTCTAATGCAGCAACTGGAAGCCCCTTATTACTCCATATACAGCCCAGTGTGACATCATTCCCTCCCACTGTCTGATTTATAATAGCGCTATTATAGAACCGGCACAAACACGGCCAGATAATCAATAATTCACATCGTCCACCAAAGGACAGAGTGAGGCATTGCTCCAGAGATCTCCATTTaacacagctaaaaaaaatcactaaaaaaatcactaaaatcaGGCATTCCTGAAACTCTTCCACGGttccacaggtgtataaaagctttataaaagcagcagctaggaaTGCTGGGTCTGCTTCTAAAAAATATTAGTGAAAGTAATTAGTGTTTCCTGTGAGTCTCAGGTCATTGTCATGatggaagacccagccatgaCTCATCTTTTGTGCTCGTACTGAAGGGAAAGTGGTGATTCGCCAAAATCTTGTGATAAATGATCCCATCCTTCCTCTCCTTTCAATACAGTGCAGTCgttcactatattcactatattgCCTAAAGTATCCAAATCACTGAACTGATTCAGGTGTTCCTGAATCTCTTCCACGGTTCCACGGGTGTATAGAAGCtttataaaagcagcagctaggcatgctgggactgcttctaaaaaaacattagtaaaattagtgaaagaatgggtctctctcaggctctcaggagctcagtgaactccagcactgtggaatACCGTAATAGTCGTGAAATTGCACTACTCAccactaaatattccacagccaactgtcagtgatattatagcACAGTGCAGTGGCGCAAATAACACTGCAACAGGAGactggtttgttggtttggcAGCTGCCAGAAGAACGATACTTGTCTGACTGCcaaaagtgtaaagtttggtagaggggggatcacGGTTCTgtacaaaaataagagagcacttaaaaatgatgagaatataatcaagaggaagatggatgatcacaaaccatcaaaccaccaaactgaactgcttggatttttgcaccaggagtaaagcagcataaagttatccaaaagcagtgtgtaagactggtggaggagaacatgatgccaagatgcacgaaaaaaaactgtgattaaaaaccagggttattccaccaaatattgattt
>TU87017
ccacttaaaaatgatgagaatataatcaagaggaagatggatgatcacaaaccatcaaaccaccaaactgaactgcttggatttttgcaccaggagtaaagcagcataaagttatccaaaagcagtgtgtaagactggtggaggagaacatgatgccaagatgcacgaaaaaaaactgtgattaaaaaccagggttattccaccaaatattgattt
>TU87019
TTACCCTCTATAAATGAATGAGAAAGTCTAATATTTGTTTCACATTTGTTTGATTTACTCCTCCTAATCTACCTTTATTATAGAATTAATTTCTCTTAATCAAGCTCTTAAAATTCTCTTTAAATGCATTGTTATGCTACTGCAATGTCTGCAAAATATATAGTCTTAAAATGCTATTATTTCCAGGATTTTTATATtgtccaataaaataaaataaaaattaattatggTGACAGGCCTTCTCCAAACCTCATAATTCTACTCATCTCAGCTCAATTCTTGCCGCACTATTTGTgccattgttttatttgtgtaaaacGAGCCAATGATAAACGATCTGTGTGCTTCTTTTTGCCGACCGcttattatttgttttgcacTTTGTGAGAATTCTTGCCGTTTTTAAGTGATTGTGTTTTGAGCCATATTGTGATAATGGTTGTGTGTGAGGATCTATAAACAGATTTTGGTAAAATTATTCTGGTTACAGTTGATttctttatatacagctctggggaaaaaaaagagaccatttaaaaattatgaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU87015 True 1861 lncRNA 0.40 4 16804561 16821444
TU87017 False 216 lncRNA 0.38 3 16804561 16839299
TU87019 False 547 lncRNA 0.31 2 16889102 16890783

Neighbor

gene id symbol gene type direction distance location
LOC111192875 LOC108437882 coding downstream 97486 16696081 ~ 16707075 (-)
LOC103027149 LOC103027149 coding downstream 144054 16654113 ~ 16660507 (-)
LOC103027662 LOC108411501,LOC108275084,LOC107658982 coding downstream 226745 16529205 ~ 16577816 (-)
slc38a2 slc38a2,s38a2,LOC103028401,LOC106609517,LOC108274720 coding downstream 335204 16459740 ~ 16469357 (-)
scaf11 NA coding downstream 353795 16431300 ~ 16450766 (-)
LOC103039070 NA coding upstream 4797 16895580 ~ 16945665 (-)
LOC103042974 LOC108437161 coding upstream 154731 17045514 ~ 17096825 (-)
cep112 cep112 coding upstream 212512 17103295 ~ 17307076 (-)
stk19 stk19,LOC106601743,LOC106601674 coding upstream 830346 17721129 ~ 17731699 (-)
LOC111192974 tvp23b,LOC108437154,LOC105899270 coding upstream 891969 17782752 ~ 17797809 (-)
G64479 NA non-coding downstream 38299 16763210 ~ 16766262 (-)
LOC111192962 NA non-coding downstream 90512 16712073 ~ 16714049 (-)
G64422 NA non-coding downstream 137322 16665021 ~ 16667239 (-)
G64418 zmp:0000000711,LOC108411497 non-coding downstream 155939 16646178 ~ 16648622 (-)
G64382 NA non-coding downstream 289693 16508936 ~ 16514868 (-)
G64505 NA non-coding upstream 14620 16905403 ~ 16906021 (-)
G64508 NA non-coding upstream 57806 16948589 ~ 16948788 (-)
G64510 NA non-coding upstream 61805 16952588 ~ 16952870 (-)
LOC111192963 NA non-coding upstream 149059 17039842 ~ 17042071 (-)
G64619 NA non-coding upstream 254495 17145278 ~ 17145667 (-)
G64387 NA other downstream 218914 16585065 ~ 16585647 (-)
LOC103027187 NA other downstream 936766 15671306 ~ 15867795 (-)
G64060 NA other downstream 1809729 14994164 ~ 14994832 (-)
LOC111192906 NA other downstream 1811831 14990229 ~ 14992730 (-)
G64034 NA other downstream 2018412 14785321 ~ 14786149 (-)
LOC111192911 cyth3b,cyth3,LOC107556600,LOC106518738,LOC108239256,LOC107376516,LOC102303741,LOC108437157,LOC108258062 other upstream 644513 17535296 ~ 17664561 (-)
LOC103043390 NA other upstream 788031 17678814 ~ 17689312 (-)
G64886 NA other upstream 1037724 17928507 ~ 17931170 (-)
LOC111192976 NA other upstream 1734092 18624875 ~ 18712520 (-)
LOC111192971 LOC108435850 other upstream 1747524 18638307 ~ 18650343 (-)

Expression


Co-expression Network