G64516


Basic Information

Item Value
gene id G64516
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 17042532 ~ 17045336 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU87063
tctcagaccacctctaGAAGTGAATAGTTTGAGTAATCagatttatatctgttttaaatgcgtctcagaccacatCGTCAAGTGAAGAGTTTAAGTAATccgatttgtatctgttttaaatctgTTTCAGACCACCTCCGGAAGTGGTCCATTCCAAAtctgtctcagaccacctctaGAAGCGAACAGTTTAAATCATCAGATTTGaatctgttttaaatttaaCATCTGTCTCAGACCACTTCCTAAAGTGGTCCATTTCAAATCTGTTTCAGACCATCTTTAGAAGGGAACAGtttaaataatcagatttgtatcggTTTTAAATGCGTCTAAGACCTTAAAGTGGTCCATTCCAAATCTGTcttagaccacctcctgaagtggttggattaatcagatttgtatgtATTTCAAATGTGTTTTAGGAGTGTTCacacttgcatttttatgtggATTGATACGGATATAATCCCGATACACAAGATACATGAAGAAACATGAAGAGACATGAAGCGACCACGTGTAAACAGGGCCTAGAGATTATATAGCActgcaatataaatataatatagtaattaTAATTGAACTttgcctgtttgtttgtttatttgtttgtttgtttgtctgtatttttttttaggacttTGTCTGAGGCATCAGGACAAGACAGTTCAATCCTGTGCAATCCTTCACGCCTGGGACCGATAACTCGAAGGCACTatgatacaaatatataaatatatatatataagtgatgAGGTCCAGTAGAGAAGTCGCGTCCCCATTGGCCGGCACAGAGACTCCTGGTTTAAGTCCGTTTAGTTAAGTGGGGGGGACTCTGGATAGACTTGTGTCCATGCATGAGTTACATTGGAAAGATCTCCCAATTCAACTAAGCAGCTTGTCCATCAGCTGGACGTGGGGCAGGAGGGAAATGAcggtttaataaatattaatagtcCTTTTACTTGTGACAAAAGCATATTATAACGTGCACATATAAGCACCTCTGCATACACActctgcatacacacacacacacaaacacacaaccatACACACCCacattacacaccacacacatccaAACCGCTACAAATAGCACAACTAAACGTTGGTCAGCAGTCCATGGTGCGGGTCGGTTGCACCGGATTTGGCGCGTCTGTAGTGTAGTCCCTCtggaaaaataatatatgtgaaaaaaataaaataaaaacagtcacCCGCATCTTCAGACAGTGGTCATAACTTGTAGTTGCGtcactttttatcttttttacgTCGTTTTGCTGTTGAGTTGAGTGTTCCAACGTCTTCCATCCAATTCCTATGGTTGGAATGGTTGGTTGGTGCcagatagataggtagacagATCTCCCAGACTGCATTGCTGGAGTCTTCCACCAACAGGCATACTTCATTGGCTAGTATTCCTTCAATAGCTTGGTGAGCCAAAATATGAAccgtgtatatataaaaaaaaatgtctctaGTGGATATATcaacttcttatttttttaatctttgaaAACACGTCGCCGCATCGGAGAAGTTCGTTCTTCGGTTTCTACGCTTTCTTCGCTTCGTTTGTTAGCTAGCCTCATGCGTTGGCGTACACAGAGCTGGTGTACACGGATGACCACTTTCCTTTGACAGTTTTTAGTCCATTCGCTCCACTTTTTCCAGAATCTTGCCCTCAAACATGGAAGGAACGATGCTCTGGTCCCATAATTCCTTAAATACAGCCACTGGCCAATGACTGAGCCAATGACTGGGTCAGAATTAGGCCAATGACTTGGCCAATGACAATCTGGGTGAAGTGCTAATGATCCCCGCTCAACTACTTTCCTCATTTAGCAGGAGGAAAGTAGGGAACCACTGACAGGGGCTTGCCGATGGTTAGAGATTtccttttacagtttttagtCCATTGGCTCCTCTTTTCCCCGAATCTTGCCATCGTACATGGAAGGAACGATGCTCTGGTCCCATACTTTCTTAAATACAGCCACTGGCCAATGACTAAGCCAGGGACTGGGTCAAATTTGGGCCAATGACTTTTCCAATGATTAAGCCAATGACTGGGCTAATGATTGGCCCAATGACTTGGCTAATAAAGACCTGGGCGAGGTGCTGAAGATCCCTCCTCTACCGTTTCCCTTTCAAACGGAAAGGCACCCATCAGAAGAGAAGTAGAGAACCACTGACAGGGGCTTGCCGATGGTTTAGAGTTTCCTTTGACAGTTTTTAGTCAAAGATCTTGCCCTCGTACATCAGTGGAACGCTGCTGTCGTCCCACACCTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU87063 True 2307 lncRNA 0.42 2 17042532 17045336

Neighbor

gene id symbol gene type direction distance location
LOC103035087 mafga,LOC107739593,LOC107556599,LOC107729585,LOC107701907 coding upstream 231302 16783913 ~ 16811230 (+)
LOC103041732 NA coding upstream 262847 16768410 ~ 16779685 (+)
LOC103042039 ern1,LOC102793659 coding upstream 277965 16717052 ~ 16764567 (+)
LOC103026270 zmp:0000000711,LOC108411497,LOC108275404 coding upstream 390874 16615571 ~ 16651658 (+)
LOC103047366 LOC108415391 coding upstream 727533 16218828 ~ 16314999 (+)
LOC111192909 si:ch73-374l24.1,LOC108437159,LOC108259727,LOC107556610,LOC107698783 coding downstream 263729 17309065 ~ 17556553 (+)
LOC111192910 cacng5b,LOC108437158,LOC107556612,LOC107698772,LOC107729207,LOC107664435 coding downstream 523463 17568799 ~ 17582128 (+)
LOC111192975 rac1,RAC1,LOC105898786,LOC108437155,LOC106601744,LOC107664344 coding downstream 644870 17690206 ~ 17702915 (+)
LOC111192980 rac1,RAC1,LOC105898786,LOC108437155,LOC106601744,LOC107664344 coding downstream 662634 17707970 ~ 17719858 (+)
LOC107197389 NA coding downstream 686758 17732094 ~ 17745773 (+)
G64515 NA non-coding upstream 520 17039967 ~ 17042012 (+)
G64513 NA non-coding upstream 38684 17003649 ~ 17003848 (+)
G64511 NA non-coding upstream 72636 16969536 ~ 16969896 (+)
G64509 NA non-coding upstream 89693 16952581 ~ 16952839 (+)
G64462 NA non-coding upstream 137855 16897550 ~ 16904677 (+)
G64539 NA non-coding downstream 213042 17258378 ~ 17259319 (+)
G64550 NA non-coding downstream 285714 17331050 ~ 17332820 (+)
G64555 NA non-coding downstream 379167 17424503 ~ 17425146 (+)
G64560 NA non-coding downstream 400421 17445757 ~ 17446222 (+)
G64574 NA non-coding downstream 484610 17529946 ~ 17530293 (+)
LOC103030423 pcyt2,LOC108437168,LOC108277112,LOC107701914,LOC105013038,LOC107576708,LOC107729574,LOC106601930 other upstream 154337 16833290 ~ 16888195 (+)
G64449 NA other upstream 166591 16873087 ~ 16875941 (+)
G64431 NA other upstream 288972 16753043 ~ 16753560 (+)
G64289 NA other upstream 600083 16439220 ~ 16442449 (+)
arid2 arid2,LOC107707985,LOC107555896 other upstream 615909 16395326 ~ 16426623 (+)
G64698 rac1,RAC1,LOC105898786,LOC108437155,LOC106601744,LOC107664344 other downstream 644873 17690209 ~ 17719912 (+)
G64990 si:dkey-282h22.5,LOC108261121 other downstream 1510792 18556128 ~ 18623499 (+)
LOC103045528 NA other downstream 2177873 19223209 ~ 19278071 (+)
LOC103044219 mcrip1,fam195b,LOC107654575 other downstream 2231466 19276802 ~ 19279517 (+)
alyref alyref,LOC107743018,LOC107665635,LOC107748861 other downstream 2234956 19280292 ~ 19340879 (+)

Expression


Co-expression Network