G64550


Basic Information

Item Value
gene id G64550
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 17331050 ~ 17332820 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU87101
GAGAACACTAGGAGGACACTTAGAGAACACTAGGAGAACACTAGAATAACACTAGGAGAACAATAGGAGAACACTAGGAGGACACTAGGAAAACACTAGAATAACACTAGGAGAACACTAGGAGAACAATAGGAGAACAATAGGAGCACACTAGGAGAACAATAGGAGAACAATAGAAAAACACTAGGAGAACACCAGGAGAATAATAGGAGAACAATAGAAAAACACTAGGAGAACACTAGGAGGACACTTAGAGGACAC
>TU87102
GAGAACACTAGGAGGACACTTAGAGAACACTAGGAGAACACTAGAATAACACTAGGAGAACACTAGGAGAACACTTAGAGGACACTAGGAGGACACTTAGAGGACACTAGGAAAACACTAGAATAACACTAGGAGAACACTAGGAGGACACTAGGAGAACACTAGGAGAACAATAGGAGGACACTAGGAGAACACTAGGAGAACAATAGGAGGACACTAGGAGAACACTAGGAGGACACTTAGAGGACACTAGGAGAACACTAGGAGAACACTAGGAGAACAATAGGAGAACA
>TU87103
GAGAACACTAGGAGGACACTTAGAGAACACTAGGAGAACACTAGAATAACACTAGGAGAACACTAGGAGAACACTTAGAGGACACTAGGAGGACACTTAGAGGACACTAGGAAAACACTAGAATAACACTAGGAGAACACTAGGAGGACACTAGGAGAACACTAGGAGAACAATAGGAGGACACTAGGAGGACACTAGGAAAACACTAGGAGAACAATAGGAGGACACTAGGAGAACACTAGGAGAACAATAGGAGGACACTAGGAGGAC

Function

GO: NA

KEGG:

id description
ko05033 Nicotine addiction

RNA

RNA id representative length rna type GC content exon number start site end site
TU87101 False 261 lncRNA 0.41 3 17331050 17332820
TU87102 True 293 lncRNA 0.44 2 17331050 17331529
TU87103 False 270 lncRNA 0.45 2 17331050 17332464

Neighbor

gene id symbol gene type direction distance location
LOC103035087 mafga,LOC107739593,LOC107556599,LOC107729585,LOC107701907 coding upstream 519820 16783913 ~ 16811230 (+)
LOC103041732 NA coding upstream 551365 16768410 ~ 16779685 (+)
LOC103042039 ern1,LOC102793659 coding upstream 566483 16717052 ~ 16764567 (+)
LOC103026270 zmp:0000000711,LOC108411497,LOC108275404 coding upstream 679392 16615571 ~ 16651658 (+)
LOC103047366 LOC108415391 coding upstream 1016051 16218828 ~ 16314999 (+)
LOC111192910 cacng5b,LOC108437158,LOC107556612,LOC107698772,LOC107729207,LOC107664435 coding downstream 235979 17568799 ~ 17582128 (+)
LOC111192975 rac1,RAC1,LOC105898786,LOC108437155,LOC106601744,LOC107664344 coding downstream 357386 17690206 ~ 17702915 (+)
LOC111192980 rac1,RAC1,LOC105898786,LOC108437155,LOC106601744,LOC107664344 coding downstream 375150 17707970 ~ 17719858 (+)
LOC107197389 NA coding downstream 399274 17732094 ~ 17745773 (+)
LOC111192970 LOC108437139 coding downstream 415808 17748628 ~ 17764121 (+)
G64539 NA non-coding upstream 71731 17258378 ~ 17259319 (+)
G64516 NA non-coding upstream 285714 17042532 ~ 17045336 (+)
G64515 NA non-coding upstream 289038 17039967 ~ 17042012 (+)
G64513 NA non-coding upstream 327202 17003649 ~ 17003848 (+)
G64511 NA non-coding upstream 361154 16969536 ~ 16969896 (+)
G64555 NA non-coding downstream 91683 17424503 ~ 17425146 (+)
G64560 NA non-coding downstream 112937 17445757 ~ 17446222 (+)
G64574 NA non-coding downstream 197126 17529946 ~ 17530293 (+)
G64580 NA non-coding downstream 229743 17562563 ~ 17565457 (+)
G64579 NA non-coding downstream 232892 17565712 ~ 17622672 (+)
LOC103030423 pcyt2,LOC108437168,LOC108277112,LOC107701914,LOC105013038,LOC107576708,LOC107729574,LOC106601930 other upstream 442855 16833290 ~ 16888195 (+)
G64449 NA other upstream 455109 16873087 ~ 16875941 (+)
G64431 NA other upstream 577490 16753043 ~ 16753560 (+)
G64289 NA other upstream 888601 16439220 ~ 16442449 (+)
arid2 arid2,LOC107707985,LOC107555896 other upstream 904427 16395326 ~ 16426623 (+)
G64698 rac1,RAC1,LOC105898786,LOC108437155,LOC106601744,LOC107664344 other downstream 357389 17690209 ~ 17719912 (+)
G64990 si:dkey-282h22.5,LOC108261121 other downstream 1223308 18556128 ~ 18623499 (+)
LOC103045528 NA other downstream 1890389 19223209 ~ 19278071 (+)
LOC103044219 mcrip1,fam195b,LOC107654575 other downstream 1943982 19276802 ~ 19279517 (+)
alyref alyref,LOC107743018,LOC107665635,LOC107748861 other downstream 1947472 19280292 ~ 19340879 (+)

Expression


Co-expression Network