G64580


Basic Information

Item Value
gene id G64580
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 17562563 ~ 17565457 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU87147
ttattaaaaattccaaacttttgaacagtagtgcaaatagtgaacattaaaaagcaacttaaatgtgtaattttaaagggttattaaagtattatttgtattataaaaGCACCAAATGTGAAATGAACCAAGAAATCGATGGTTTTACTGGTTTTACATAACAATACCTATTATAATTCACCATAATTTAACATGATctgatataatatgatataaaattCATAAATCTCATTTGAGTTGAGTCTGAAGGGCATTTCTGTTTGATCCGGTTTGATCTGGTTTGATCTGGTTTGATCTGGTTTGTTATAACAGGATGCACATTGCTCTGTATGCGTTATGATGTTTGATGCatgctttttttctctgtttgtaaCGTCCAATAGCGAGCCCCGTACCGAGCCCCGCCCCTCTGAGATTACGAGACCAAGTGTTTATGTACTTTCTGGTGATGAATTCTGTATGCTACTACAGTGTATGCtctgaatttcttttttttttcaaaagctgtgttttattataaatatatataaatatatacatacgatatttcttatattatctttcgaatatatatttttttcgtttatttagttttgttttgtttcgttTTATCGTTTTTGCTTTGTGAATACCTTCACGTCGAGAGATATGTTTACcgtaaaaaaacactaaagcaaAACTATATCaagctttttgtttgtttttttagtttagatttgtttagttttgtttgttttgtaaataGCGAGGCTGTTTCAGAAAGATTTTACGTTATAACTGTAGATTTTGTACCGAGAACTTGAATGTGCTTTTACTAACTTTAGACGGTTACGAGATTTCTGTACGTTTTAGACGATCTGATTACGAATAAAAGAGGCTAGTTTCAGCAGAAAGTTTGATAGCTTTGGTATTGGAGAAATcttgtaatatatttatgtatttatttcacGTATTTAAGCGCACTGTGGGAATTTTctgtaacagtacagaaaattcacTGTTGGGTTCACACCTCAGTATAAATCTCACAGTTTGATATGTTTTCggtacaagagagaaagagagagagcacacgagagagagagagagagagagcacgagagagaaagagattgaggGTGCGCGCGTGAGAGAGAGCATgcgcgagtgaaagagagagagagaaagtgaaaaatattactaggagagagagggagtgagagagggcATGTACGTGAGATAATGAGAGAGTGCacgcgaaagagagagagagggcatgcGTGTGTGatacagagagacagcgagcgtgagagagagagaggaggcgcgagcgagagagagagagagcgcgagagataGAGAAATACATTActagacggagagagagagagcacgctcGCAAGAGAAACATATtactatagagagagagagagcacacgcaagagagagagagagagggcgtgcgtgagagagagaggggaggcgcgagagagagagagcgcgagagataGAGAAATATATTACTAgacggagagagggagaaagcaCGCACGCAAGagaaatgtgtgagagagatagtgtgtgagagagagagagagagagcgtgtgagagagagagagcgtgcgagagagagcgtgtgagagagagagagagagagagagagagcgtgcgaGAGAGGGATAGATAGAGAAACATATTactagagaaagagagcgagagatagtGCGTGCGAAAGAGAGAGGGCGCGAGAGAGAGTCTCCTATAAGCTGTACCGTGTATTCTGACTCTGTACCGCGACGGTTGGTAAAGAATACAGGTAACGTTACATCCTAGTATCTGGTTCTGGCTGCTGATAGGTCCAGCACTCCCTCGAGTTCTGCAACTTCCTGTCCTTGTGTTCGCTTTCACTTTGTGCATGCGAGGGTACGAGCAAATCGGAGCATGCATCTGCAGCGTCGCATGTTACGAAATTtttggttaaaataaaaaaaagtctaggAATAAATGGCCACGTTTTGCCAAGCGTAAAAAGTTCGTCACTCGttctcttgtgctgttctttcTTTCGCTTTTACCCCAGACACTGAACAGAGAACTAGACTAGACTGTAGAGTTTATAGacttgtttatagtttatagactATAGAACTAATTCTGCTTTTAACGGcccaaaaaagacaaaattctACTTTTATCTTTGGCGTAAATCACCTGCGGTTCTCAGGTGTTCTCCCATCCAGTCCAGGTACTGACCAGACCCAACCTTTAGCTTAGCGCTTCTCAGGTTCTCAATctttatcagttttaaatattttctctaCCGTCAATCGTGCCAAGAATTTACGCCTAAATTTGTACAAATATGAGAAACTAgtctgtaatattttaaaacaatattttaccttttatttatcgGCTCTCCTCGTCCAATCATACGCAAGAATTTCTGGTGACACTTTATACAATAAGGGTACGGtaattaacagtactttaacaaaaaaatgtctcaactattttttattaattgacactagtaaAGACATTATTTgcaattaattattacattacaactttttaatgaatgcacaaatttattcttatttacaacatttttatgcattgaaacgtttaatgtttaaaagtttaataatgtcaaaactagtgtcaattaattattaattgaaacttttaaaccatttaacGATGTGTATTACTGTAGTAAGTCATAAGTTCTGTTAATTGAGACCCTtattgtatatacagctctgtaaaaaatgaagagatcacttcagtttctgaatcagtttctctgattttgctatttataggtttatgtttgagtaaaatga

Function

GO:

id name namespace
GO:0051179 localization biological_process
GO:0051234 establishment of localization biological_process
GO:0015672 monovalent inorganic cation transport biological_process
GO:0030001 metal ion transport biological_process
GO:0006810 transport biological_process
GO:0006811 ion transport biological_process
GO:0006812 cation transport biological_process

KEGG:

id description
ko04024 cAMP signaling pathway
ko04713 Circadian entrainment
ko05031 Amphetamine addiction
ko05033 Nicotine addiction

RNA

RNA id representative length rna type GC content exon number start site end site
TU87147 True 2829 lncRNA 0.37 2 17562563 17565457

Neighbor

gene id symbol gene type direction distance location
LOC111192909 si:ch73-374l24.1,LOC108437159,LOC108259727,LOC107556610,LOC107698783 coding upstream 6010 17309065 ~ 17556553 (+)
LOC103035087 mafga,LOC107739593,LOC107556599,LOC107729585,LOC107701907 coding upstream 751333 16783913 ~ 16811230 (+)
LOC103041732 NA coding upstream 782878 16768410 ~ 16779685 (+)
LOC103042039 ern1,LOC102793659 coding upstream 797996 16717052 ~ 16764567 (+)
LOC103026270 zmp:0000000711,LOC108411497,LOC108275404 coding upstream 910905 16615571 ~ 16651658 (+)
LOC111192910 cacng5b,LOC108437158,LOC107556612,LOC107698772,LOC107729207,LOC107664435 coding downstream 3342 17568799 ~ 17582128 (+)
LOC111192975 rac1,RAC1,LOC105898786,LOC108437155,LOC106601744,LOC107664344 coding downstream 124749 17690206 ~ 17702915 (+)
LOC111192980 rac1,RAC1,LOC105898786,LOC108437155,LOC106601744,LOC107664344 coding downstream 142513 17707970 ~ 17719858 (+)
LOC107197389 NA coding downstream 166637 17732094 ~ 17745773 (+)
LOC111192970 LOC108437139 coding downstream 183171 17748628 ~ 17764121 (+)
G64574 NA non-coding upstream 32270 17529946 ~ 17530293 (+)
G64560 NA non-coding upstream 116341 17445757 ~ 17446222 (+)
G64555 NA non-coding upstream 137417 17424503 ~ 17425146 (+)
G64550 NA non-coding upstream 229743 17331050 ~ 17332820 (+)
G64539 NA non-coding upstream 303244 17258378 ~ 17259319 (+)
G64579 NA non-coding downstream 255 17565712 ~ 17622672 (+)
G64583 NA non-coding downstream 23465 17588922 ~ 17596129 (+)
G64586 NA non-coding downstream 57404 17622861 ~ 17674161 (+)
G64595 NA non-coding downstream 112471 17677928 ~ 17678442 (+)
G64710 NA non-coding downstream 203790 17769247 ~ 17815728 (+)
LOC103030423 pcyt2,LOC108437168,LOC108277112,LOC107701914,LOC105013038,LOC107576708,LOC107729574,LOC106601930 other upstream 674368 16833290 ~ 16888195 (+)
G64449 NA other upstream 686622 16873087 ~ 16875941 (+)
G64431 NA other upstream 809003 16753043 ~ 16753560 (+)
G64289 NA other upstream 1120114 16439220 ~ 16442449 (+)
arid2 arid2,LOC107707985,LOC107555896 other upstream 1135940 16395326 ~ 16426623 (+)
G64698 rac1,RAC1,LOC105898786,LOC108437155,LOC106601744,LOC107664344 other downstream 124752 17690209 ~ 17719912 (+)
G64990 si:dkey-282h22.5,LOC108261121 other downstream 990671 18556128 ~ 18623499 (+)
LOC103045528 NA other downstream 1657752 19223209 ~ 19278071 (+)
LOC103044219 mcrip1,fam195b,LOC107654575 other downstream 1711345 19276802 ~ 19279517 (+)
alyref alyref,LOC107743018,LOC107665635,LOC107748861 other downstream 1714835 19280292 ~ 19340879 (+)

Expression


Co-expression Network