LOC103043390


Basic Information

Item Value
gene id LOC103043390
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 17678814 ~ 17689312 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU87312
CGGAGTATGAGTGCGGCCGGGCTGCGGTATCGGTTCGAGGTTAAGCCCGGTACAGAACCATGCTGACCCGGCGCGGGAGAGCGGGCCTGTCGGGGCGGGGAGCTGGGCTGTGAGCCGCGGTTCTGATGGCGGGACTGTCGTACCTGGTGCTGCGGTTCTCGGGCTCCGCGGGCCGAACCTACGGACTGTTCTCTAAAGGACTCACCCGAACCCTGCTCATATTCTTCGACCTGGCCTGGAGGCTCCGGATCCGGTTCCCCTACCTCTACCTCATCGCCTCTATGATGTTTAATGTTCGCCTGCAGGTTCACATCGAGATACATTAATATGCGCCGACGGACTTCCATCACTGACAGAATGGCCAATCGCTGCTTTAGACCCCGTCCGAGGTGAAAAGGTTCAGCAGCTCTGGGAGATAAACGTATGGAggaaacagatacagagaggATGGAGCCGCCGCCTCCGTCGCTCTGCTTCACAGCAGATCTGGATCCTGACCTGAGATCAGCGTCTGCAGAGCGTCGCCATGtttctgctgctgatgatgttgatgatgtttGTTGGGACTTCGGCGGCTTTCGGCGTGAAAGCTTCGCTCTGTGGACCGAGTGCGATGGCCGAAGGTGATGGAAACCATATTCAGGGTGTTCTTAatcttaaaaaatctaaaaaactaaaaatatcctGTTTTTCTGGAATTATTTGGACTTTCTGCTCATTTCTAACAGCAGAAGTGACCAACTAGAGCCTTGATGTTTATAGAATTTTAAGGGGATGGGTTCATAGACGTTTCTAAATAGGTCCTGTATGActttggctacgttcacacatCAGGTAAATCCAAGGGCCCAAATCTTTATGGCTGTTcgttttggggggaaaaaagaaaggggGCACTTcggtttctgaaccagtttctctgaatttgctatttataggtttatgtttaagtaaaattaacattattgtttgACTCATATTTGTAATgatttaggagttcagaaataatcaatatttggtggaataaccttggtttttaatcacagtttttttcatgcatcttggcatcatgttctcctccaccagtcttacacactgcttttggataactttatgctgctttactcctggtgcaaaaattcaagcagttcagtttggtggtttgatggtttgtgatcatccatcttcctcttgattcctctagatttttatgtggttttcctttttttcaaacAATAGCGTTAATGTAGAATATTATAGTTAAATTCCTTTACATAATACAGAAATTCAGTAAGATTAATTCAGCTTCAAGTCTCAACCACGCTTGAtgtacagctttgaaaaaaaaattgagagcacacagtttctgaatcagttcctctgattttgctatttctcccaaattgcaaaacaaaaaaatcgttcattcattcatttagagcatttatttgcagaaaatgaaaaatggcgaAATAGCGAAAGTGTGTACGCAAAGTCtgattctgacagagagctaGAATTATAAACTAAAATTTCACAAacgatttattaatttattaagtaaaaagagactccgcccacatagaCGATGTCGACAGGATGTAGGATGAAGTTGCTGAATGTGCTCAGTCACTAAACTAcagtgtgaaaccgaaactaaacGTGACAAAGACCTTGGTGAACCTTGGTGCAAACTATAGTCTGGACTggtcaggtgtgaaaacgcccttattTTATTGGAACAGAGACATAAAACTTAATATTTATGGCCTCTGTCAACCCTTATTCATAGCTATTGTGCTTTATATCATCACTTACTCACAGCCTTTTTAACTTAAAAGTTGAAAAATTCTAATTTCGCTGTTCAGACTGATTCACAATAGAGCTGCACGATACTGGaaaaatttacattgcaaatgttctttttttcgattatatatatatatatatatatatatatatagcaatattaaacagtgcagggctcatgacgtcaccagccccacccccacccacgCACTACCTGTCTCGCATCTGggccaatcaagagctgagtcagcggcGAGTTCTCAAAACCCGAgataaacagcaaaacaacagtaatcagccctttaatcaggcatttgaATGCTtgtaaaaggtaaataagattaagaataagtttttctgggattaaaagcgtgaattcagctgtaactggaaatatctgcactgctaaactgtgctggactgaggagcacagctttccacacgtgattacgtttacaagcacgtgcccaaccatgtggatggaggccatgcttGTGGTTACGTTGTGTTTATTACTGCCCCTCCCcctcgtgcttctcaggcagcagcagcctgtcactcacacagacacagagacagcgctgtgtatctacttctagtgttgcttaaacgatatatcatgcagccctaattcACAATGTTCACAAGTCAGATAAGTATCAGAATTTAATGTATACACacatattaaatagaaaatatcaaattcagtgtatttttacTGTTACTCTGCCGCTCAGATAACAGATCTGTATCACATATGAtgtaaaatatcagattttttgccACATTTACCTGCTGAGTGAACGTAGCTCTGAGAACAGACTGCCTCTTACAGAGCGTTACAGTGAGGTTCGTCAGTGTTGAGATGTTCACAAACTCATATTTATCTTGATTTGTTAAAGTTTTACGGGGAGTTTTACGTTGTTTGGACATGTAGCAGATGAATAATCTCACGTTTCATGTTTACTGGAGGTCAAATAACCCGCGTtactgaggaagaggaggggcTGTGTTGTTTTATATCTCCTAATATATAGCGCTTTATCAAGGGATGTGGTTTtccatacataaatacatacttatatacacacagacacacacacaatcacaacatGTTTAATCAAAATCACATGAGTGGGATTTCTTAGGTTACCGGTACATTCACACCGCAGGTAAAAACAGCCGAAATctgaattttttatttctctgtttgttagcctgtttacactgtgttttaatgtgatttatatcCAAAATTGGTctaagaaacagtttgtgctcaTGTATTAGAGAGCagcgcttcacgtgaagtttcggtttcatcttctcTAGTCTTACAGGATGTATTAAAGCAGTTCCTGTGTCTGCAGTAGGCTTATTATCATCGAAAATGCATttaagctcactgtaaaaaggacattatattatttagtttagccacacccactactttagtttatgttcttgtTTCAGGCTGTTTTTTATCATGCCAGTGCCATGTTTAGctatttttccttttcatttgACATAAATCACATTAACATTAATTCTTATCTGACTGTTTAGACTTATAAATTCACAGAGGTCTAAGGTGttgtcactatgatcaggaactcgctggttcgaatcctgttcattcagcttgccatcagctgccagagccctgagagagcacaggcgctcttctttcccctcatcactcctagggtgatgtggatcagcacaaggctgcatctgtgagctgatgtatcagaaccgagtcgctgcgctttcttccgagcgttagcgctgtgatgctactcggcaatgctacatcagcagcagttcagaaagaagtggagtctgacttcacatgtatcagaggaggcatgtgctggttttcaccctcctggtgtgttggggcatcactagtgatagggggagtgtcctaatgagtgggttgggtgattggccgtgtaaattggggagaaaatgggaaaataaattagaaaagaaaaaaaaatcacaaaaacacaataactaAACCGATCAGATTTGGGCcgattttacctgctgtgtttttgggAGTTTATGGCTAGTTTTgtcattttacttatttatatttagaatcACATTTAAAAGTACTGAATTTTGGTACATGCATGtagtttaatttttctttttttccgtACACATGGGTTCAGGTTAAAAGTTATATAATCCCTGCTGTTAcaccaaaaaataagaaagtaaattaaaactgactcatgtttgagctaaagggctgttcaggtgcagtttaatctgatttattacccagataataaTTACTAACTACAGCTATTAACTAATGCAGCTCTGCTGTATGTTCAGTACATGCTAGAACACAGCATGTTAGAccctcttcctgtatttactatattactgtatttattctaGCTAAtccccagacagctctgaccaatcagaggagactacCTGCTCGTGTGGATTTTAGGGCTCATATTGGTGCTTTTAGGTTTTaggtgcctgtgtgaaaacaaaccaaacagaggggaAAACTCACCAAGAAAACGAAGTCATGAACTGATTAAGACCAGAGAAACCGAATACAGGTGTAAAAACTCTCCTTAATCACCTCTAAAATTTCATGTTTCCTCAAGGTCATGGTATGGGACAATAATGCTATAAAttatattgaattattattatttatattttttaagaatgc
>XM_022671452.1
CCGGTGGGGAACAGTGACAGCGGGGCGGAGTATGAGTGCGGCCGGGCTGCGGTATCGGTTCGAGGTTAAGCCCGGTACAGAACCATGCTGACCCGGCGCGGGAGAGCGGGCCTGTCGGGGCGGGGAGCTGGGCTGTGAGCCGCGGTTCTGATGGCGGGACTGTCGTACCTGGTGCTGCGGTTCTCGGGCTCCGCGGGCCGAACCTACGGACTGTTCTCTAAAGGACTCACCCGAACCCTGCTCATATTCTTCGACCTGGCCTGGAGGCTCCGGATCCGGTTCCCCTACCTCTACCTCATCGCCTCTATGATGTTTAATGTTCGCCTGCAGGTTCACATCGAGATACATTAATATGCGCCGACGGACTTCCATCACTGACAGAATGGCCAATCGCTGCTTTAGACCCCGTCCGAGGTGAAAAGGTTCAGCAGCTCTGGGAGATAAACGTATGGAggaaacagatacagagaggATGGAGCCGCCGCCTCCGTCGCTCTGCTTCACAGCAGATCTGGATCCTGACCTGAGATCAGCGTCTGCAGAGCGTCGCCATGtttctgctgctgatgatgttgatgatgtttGTTGGGACTTCGGCGGCTTTCGGCGTGAAAGCTTCGCTCTGTGGACCGAGTGCGATGGCCGAAGGTGATGGAAACCATATTCAGGGTGTTCTTAatcttaaaaaatctaaaaaactaaaaatatcctGTTTTTCTGGAATTATTTGGACTTTCTGCTCATTTCTAACAGCAGAAGTGACCAACTAGAGCCTTGATGTTTATAGAATTTTAAGGGGATGGGTTCATAGACGTTTCTAAATAGGTCCTGTATGActttggctacgttcacacatCAGGTAAATCCAAGGGCCCAAATCTTTATGGCTGTTcgttttggggggaaaaaagaaaggggGCACTTcggtttctgaaccagtttctctgaatttgctatttataggtttatgtttaagtaaaattaacattattgtttgACTCATATTTGTAATgatttaggagttcagaaataatcaatatttggtggaataaccttggtttttaatcacagtttttttcatgcatcttggc

Function

GO:

id name namespace
GO:0046530 photoreceptor cell differentiation biological_process
GO:0042461 photoreceptor cell development biological_process
GO:0035845 photoreceptor cell outer segment organization biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU87312 True 4519 lncRNA 0.40 2 17678814 17689287
XM_022671452.1 False 1091 mRNA 0.49 2 17682267 17689312

Neighbor

gene id symbol gene type direction distance location
cep112 cep112 coding downstream 371738 17103295 ~ 17307076 (-)
LOC103042974 LOC108437161 coding downstream 581989 17045514 ~ 17096825 (-)
LOC103039070 NA coding downstream 733149 16895580 ~ 16945665 (-)
LOC111192875 LOC108437882 coding downstream 971739 16696081 ~ 16707075 (-)
LOC103027149 LOC103027149 coding downstream 1018307 16654113 ~ 16660507 (-)
stk19 stk19,LOC106601743,LOC106601674 coding upstream 31817 17721129 ~ 17731699 (-)
LOC111192974 tvp23b,LOC108437154,LOC105899270 coding upstream 93440 17782752 ~ 17797809 (-)
LOC111192966 NA coding upstream 117762 17807074 ~ 17817082 (-)
ush1g ush1g,ush1ga,LOC107556601,LOC107698769,LOC107568596 coding upstream 150867 17840179 ~ 17855162 (-)
hid1 hid1,LOC107710705,LOC107698779 coding upstream 195308 17884620 ~ 17920811 (-)
G64692 NA non-coding downstream 149 17677102 ~ 17678665 (-)
G64688 NA non-coding downstream 8397 17606894 ~ 17670417 (-)
G64694 NA non-coding downstream 36585 17640160 ~ 17642229 (-)
G64682 NA non-coding downstream 97222 17578797 ~ 17581592 (-)
G64632 NA non-coding downstream 505252 17172649 ~ 17173562 (-)
G64835 rac1,RAC1,LOC105898786,LOC108437155,LOC106601744,LOC107664344 non-coding upstream 917 17690229 ~ 17719911 (-)
G64841 rac1b,rac1,LOC103481976,LOC106531821,LOC102217008,LOC105935606 non-coding upstream 18684 17707996 ~ 17715442 (-)
G64857 NA non-coding upstream 79935 17769247 ~ 17815728 (-)
G64867 NA non-coding upstream 121864 17811176 ~ 17953544 (-)
G64882 NA non-coding upstream 191138 17880450 ~ 17882420 (-)
LOC111192911 cyth3b,cyth3,LOC107556600,LOC106518738,LOC108239256,LOC107376516,LOC102303741,LOC108437157,LOC108258062 other downstream 14253 17535296 ~ 17664561 (-)
G64492 NA other downstream 790911 16882335 ~ 16887903 (-)
G64387 NA other downstream 1093167 16585065 ~ 16585647 (-)
LOC103027187 NA other downstream 1811019 15671306 ~ 15867795 (-)
G64060 NA other downstream 2683982 14994164 ~ 14994832 (-)
G64886 NA other upstream 239195 17928507 ~ 17931170 (-)
LOC111192976 NA other upstream 935563 18624875 ~ 18712520 (-)
LOC111192971 LOC108435850 other upstream 948995 18638307 ~ 18650343 (-)
G65184 LOC108435872,LOC108274344,LOC107731677,LOC107558868 other upstream 1208873 18898185 ~ 19023658 (-)
G65231 alyref,LOC107665635,LOC107748861,LOC107743018,LOC107654581 other upstream 1590990 19280302 ~ 19284032 (-)

Expression


Co-expression Network