G64698 (rac1,RAC1,LOC105898786,LOC108437155,LOC106601744,LOC107664344)


Basic Information

Item Value
gene id G64698
gene name rac1,RAC1,LOC105898786,LOC108437155,LOC106601744,LOC107664344
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 17690209 ~ 17719912 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU87324
TGCTGTGGGGTGTGAAGGTGTTGGGTGGTGGCTGTAAACTTTGCTGAGTTTCAGATCGGAGCCGCAgcgctgcagagagagacagagggagataaAGCGGATTTTTTAACAGTAGAGGGAGTTTAttagttagtttattagtttaaacaggttttactgtatttaaaccggttattaaatagtttattaGCACATTAGCTAACTGCTACTTACCGTTAGCTCATAAAGGCTCAGTAACCCGGAGTAATGCAGGCCAtaaagtgtgtggtggtgggagACGGGGCTGTAGGTAAAACATGTCTGCTGATCAGCTACACCACCAACGCTTTCCCAGGAGAGGACATCCCCACAGTATTTGATAACTACTCTGCGAATGTGATGGTGGATGGAAAACCAGTTAACCTGGGTCTGTGGGATACAGCAGGACAGGA
>TU87328
TGCTGTGGGGTGTGAAGGTGTTGGGTGGTGGCTGTAAACTTTGCTGAGTTTCAGATCGGAGCCGCAgcgctgcagagagagacagagggagataaAGCGGATTTTTTAACAGTAGAGGGAGTTTAttagttagtttattagtttaaacaggttttactgtatttaaaccggttattaaatagtttattaGCACATTAGCTAACTGCTACTTACCGTTAGCTCATAAAGGCTCAGTAACCCGGAGTAATGCAGGCCAtaaagtgtgtggtggtgggagACGGGGCTGTAGGTAAAACATGTCTGCTGATCAGCTACACCACCAACGCATTCCCAGGGGAGTACATCCCCACAGTATTTGATAACTACTCTGCGAATGTGATGGTGGATGGAAAACCAGTTAACCTGGGTCTGTGGGATACAGCAGGACAGGAAGACTACGACAGGCTCCGCCCCCTCTCCTACCCTCAGACAgatGTGTTTTTGATCTGCTTCTCCCTTGTAAGTCCGGCCTCTTTCGAAAACGTTCGCGCAAAGTGGTACCCAGAAGTAAGACACCACTGTCCAAACACTCCCATCATCCTGGTAGGAACTAAACTCGATCTGAGGGACGATCAGGACACCATCGAGAAGCTGAAGGAGAGGAAGCTCACCCCCATCACCTACCCTCAGGGCCTGGCCATGGCTAAAGAGATCGGAGCCGTAAAGTACCTGGAGTGCTCAGCCCTGACTCAGCGCGACcttaaaacagtgtttgatGAAGCCATCAGAGCCGTCCTCTGCCCTCCGCCGGTGAAGAGCAGGAAGAGGAAGTGCACCCTGCTGTA
>TU87329
aatgcgcactctctccgcttttagactctttggcccgtttctgacacctagcgttcaaactttgaatctcacattataaaaacctgcttaacagcgggccaactttcattctatttttaaaatacctcgcgggccgctctaaaaaaggaaacggcccgcaaatggcccgcgggccattgtttggacacccctgatctaagTGGTACCCAGAAGTAAGACACCACTGTCCAAACACTCCCATCATCCTGGTAGGAACTAAACTCGATCTGAGGGACGATCAGGACACCATCGAGAAGCTGAAGGAGAGGAAGCTCACCCCCATCACCTACCCTCAGGGCCTGGCCATGGCTAAAGAGATCGGAGCCGTAAAGTACCTGGAGTGCTCAGCCCTGACTCAGCGCGACcttaaaacagtgtttgatGAAGCCATCAGAGCCGTCCTCTGCCCTCCGCCGGTGAAGAGCAGGAAGAGGAAGTGCACCCTGCTGTAGAAGTGGAcctatgaatatatatatatatttatatatatgtatatgaatatgaatattttggGCCTGAACAGCTTCAGTGTTGTTTACCTGCTTCAACAGAAGCACAGATATACCTCTTAACTACGCTACAGCAAGATTGTAACTCGCTAtcgttaagctaagctaagctaatccTCTTCAATACTACAGCCCAGTCTATGTAAAACAATTAATGAGATTAACGAGAtggaaacaaacaaactgaggtctgaaagtgtggaaagtgtgtgtatgtgtgtactgaAGTGtatgtgaaaatgtgtgtgtgggaatcGATGCATCGATCATATAAAAGAACACTATATATATTAGGGCTATCTGTATTCTTGATCCTTTAATGGTTTCGATGCATTTATAATAAACcttataataaatacagcagtAAATATTCTTTACAGGGTGTTTTTGTTAACGGCACATTTATAGCAACATATTTTTCCcgtc
>TU87330
AGTGGTACCCAGAAGTAAGACACCACTGTCCAAACACTCCCATCATCCTGGTAGGAACTAAACTCGATCTGAGGGACGATCAGGACACCATCGAGAAGCTGAAGGAGAGGAAGCTCACCCCCATCACCTACCCTCAGGGCCTGGCCATGGCTAAAGAGATCGGAGCCGTAAAGTACCTGGAGTGCTCAGCCCTGACTCAGCGCGACcttaaaacagtgtttgatGAAGCCATCAGAGCCGTCCTCTGCCCTCCGCCGGTGAAGAGCAGGAAGAGGAAGTGCACCCTGCTGTA

Function

symbol description
rac1 Enables GTP binding activity; GTPase activity; and enzyme binding activity. Involved in several processes, including plasma membrane bounded cell projection assembly; positive regulation of cellular component biogenesis; and regulation of cell migration. Acts upstream of or within actin cytoskeleton organization; positive regulation of lamellipodium assembly; and ruffle organization. Located in several cellular components, including recycling endosome membrane; ruffle membrane; and trans-Golgi network. Is extrinsic component of cytoplasmic side of plasma membrane. Is active in glutamatergic synapse and postsynapse. Colocalizes with actin filament. Implicated in autosomal dominant mental retardation 48; colon adenocarcinoma; and pancreatic adenocarcinoma. Biomarker of colon adenocarcinoma; colon adenoma; colorectal cancer; and pancreatic ductal adenocarcinoma.

NR:

description
PREDICTED: ras-related C3 botulinum toxin substrate 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU87324 False 431 lncRNA 0.45 3 17690209 17715175
TU87328 False 824 TUCP 0.50 6 17690209 17719428
TU87329 True 974 lncRNA 0.43 3 17716918 17719912
TU87330 False 292 lncRNA 0.55 2 17717468 17719428

Neighbor

gene id symbol gene type direction distance location
LOC111192910 cacng5b,LOC108437158,LOC107556612,LOC107698772,LOC107729207,LOC107664435 coding upstream 108081 17568799 ~ 17582128 (+)
LOC111192909 si:ch73-374l24.1,LOC108437159,LOC108259727,LOC107556610,LOC107698783 coding upstream 133656 17309065 ~ 17556553 (+)
LOC103035087 mafga,LOC107739593,LOC107556599,LOC107729585,LOC107701907 coding upstream 878979 16783913 ~ 16811230 (+)
LOC103041732 NA coding upstream 910524 16768410 ~ 16779685 (+)
LOC103042039 ern1,LOC102793659 coding upstream 925642 16717052 ~ 16764567 (+)
LOC107197389 NA coding downstream 12182 17732094 ~ 17745773 (+)
LOC111192970 LOC108437139 coding downstream 28716 17748628 ~ 17764121 (+)
LOC111192968 NA coding downstream 49016 17768928 ~ 17780592 (+)
amn NA coding downstream 84372 17804284 ~ 17805826 (+)
otop2 otop2 coding downstream 140305 17860217 ~ 17879272 (+)
G64595 NA non-coding upstream 11767 17677928 ~ 17678442 (+)
G64586 NA non-coding upstream 16048 17622861 ~ 17674161 (+)
G64579 NA non-coding upstream 67537 17565712 ~ 17622672 (+)
G64583 NA non-coding upstream 94080 17588922 ~ 17596129 (+)
G64580 NA non-coding upstream 124752 17562563 ~ 17565457 (+)
G64710 NA non-coding downstream 49335 17769247 ~ 17815728 (+)
G64709 NA non-coding downstream 60770 17780682 ~ 17815649 (+)
G64753 NA non-coding downstream 237701 17957613 ~ 18008671 (+)
G64754 NA non-coding downstream 252667 17972579 ~ 18061330 (+)
G64760 NA non-coding downstream 279463 17999375 ~ 18000064 (+)
LOC103030423 pcyt2,LOC108437168,LOC108277112,LOC107701914,LOC105013038,LOC107576708,LOC107729574,LOC106601930 other upstream 802014 16833290 ~ 16888195 (+)
G64449 NA other upstream 814268 16873087 ~ 16875941 (+)
G64431 NA other upstream 936649 16753043 ~ 16753560 (+)
G64289 NA other upstream 1247760 16439220 ~ 16442449 (+)
arid2 arid2,LOC107707985,LOC107555896 other upstream 1263586 16395326 ~ 16426623 (+)
G64990 si:dkey-282h22.5,LOC108261121 other downstream 836216 18556128 ~ 18623499 (+)
LOC103045528 NA other downstream 1503297 19223209 ~ 19278071 (+)
LOC103044219 mcrip1,fam195b,LOC107654575 other downstream 1556890 19276802 ~ 19279517 (+)
alyref alyref,LOC107743018,LOC107665635,LOC107748861 other downstream 1560380 19280292 ~ 19340879 (+)
LOC103037311 LOC103037311,LOC103358095,LOC106514816,LOC107386321 other downstream 2060751 19780663 ~ 19794325 (+)

Expression


Co-expression Network