G64792


Basic Information

Item Value
gene id G64792
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 18266239 ~ 18329102 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU87464
CGTGGTTTTAAAGAGGCACGCCGTTTGGGACACACCCATTTGTCCACCTGCAGCCACGTGCACGCTGTACTCCTACAGTAACATAAACACTGCGGATAAAACCAGAGAAAATCCGGGTCCGGGTCTTCGTTAAGGTGGCACCGGCACGAGCCATGACTCTATGATAAGTACTTATGACTGACATCACCTGCTGACCAATAGGATGCCCGGCTGTAGTATTGGGGGAGGAGCCAACTACTGGTTAAATGCCGAGTCCAAGACGACTgttgaagagagagagGAACCCTGTGTGAACCCCTAGCTTCAGCACTGAAGCAGCACAGGAATGCAGAATAGAGGAAATCAACCCTCAGACTCTTCTACTCCCTGTCTGTCTTCCTGTCTgtcttcctgtctgtctgtctgtgtggaaTGCCTGAGGATTTCTGCAGAAAACAATTTGTTTTAATGAATTCTTCATAAGAAAGAAGGAGGTTCTTCTGAGGAAAACACTCATTTTACCCAAACGCTCTCAAAGAGAAAGAGTTTCATGTTCCTACCCTGCAAAAAATACtaatagtgcatctcaaaaaacattagaatatcattgaaaagttagtttatttcagtaattcagttgaaaatgtgaaacttatatactatatagatgtatcaaacacagagtgatttatctattttaagcgtttatttaatcttttgttgttgattattgattatgacTAACAGCCGATAAAAAACgcaaaagtcagtgtctcagaaaattagaatattatataataagaccaattggtacttttggtacgcagtgtgggcagtgtgccaagtcctgctggaaaatgaaatctgcgccccaaaccatcactgattgtggaaagttggactgtgtgtctctccactcttcctccagactctgctctcttgATTTTTCTCaaatgaaatgttaaatgtactgatgatcagtgatggtttggagagacaggtCTGTCTTTAACATTTTTGCGCGTGTAAATGCTGCTACTTCcatattcttttatattattttgtgtatttatcttatctatttatatctattattgtagttttattctattttatattgtctatatatgtatctattttaaaattgctctttgggtgtaaactggccGGTTCTACCTCATGTACCACACGTGATGTGAAATCACAATAAAATCACCTTGAATCCGtaaatctttaaatgctttGTAAGAAAATAAGTTTTGAGATTTTTTGAATCAAAATTAGaacatttcacttgctaagatttagttttctcaggggctttattttatttgttttattattttttttatttatttatttatgcacagtacattaaataaaaacataataaagacaAAAGTTGTAGtaatacaaatagaaataaaaaaaaggaaagtacAAAAAAGCAACAGCAGAGCTTGTATTAGGGCACTTTCCCAttgtatttaaatgaattatattttaagtaaatatacaaaatatgaaGGAGATTAGGAATTGGAAGGGGGAAAGTTGATTAATTAATAggtagtttaataaatacagaattgCAATAAATTCACATTGCAATAAAGAATtctatttttcctatttttaaaggtgtaatctgtttatttttttactgttttaccttCATTAGTCGTC
>TU87465
CGTGGTTTTAAAGAGGCACGCCGTTTGGGACACACCCATTTGTCCACCTGCAGCCACGTGCACGCTGTACTCCTACAGTAACATAAACACTGCGGATAAAACCAGAGAAAATCCGGGTCCGGGTCTTCGTTAAGGTGGCACCGGCACGAGCCATGACTCTATGAACACGTCTTAAGGGTaaatcttacaccctgcgcaaggtgaatcgtgatgctcatcgctatcttacaccccaccaacagtctattttcactcctggTTTCCTcttgtctggtttaaacagcagcagatcttcttaatatatctacactgatgggcgtggtgttctggaaatgagTAAGTACTTATGACTGACATCACCTGCTGACCAATAGGATGCCCGGCTGTAGTATTGGGGGAGGAGCCAACTACTGGTTAAATGCCGAGTCCAAGACGACTgttgaagagagagagGAACCCTGTGTGAACCCCTAGCTTCAGCACTGAAGCAGCACAGGAATGCAGAATAGAGGAAATCAACCCTCAGACTCTTCTACTCCCTGTCTGTCTTCCTGTCTgtcttcctgtctgtctgtctgtgtggaaTGCCTGAGGATTTCTGCAGAAAACAATTTGTTTTAATGAATTCTTCATAAGAAAGAAGGAGGTTCTTCTGAGGAAAACACTCATTTTACCCAAACGCTCTCAAAGAGAAAGAGTTTCATGTTCCTACCCTGCAAAAAATACtaatagtgcatctcaaaaaacattagaatatcattgaaaagttagtttatttcagtaattcagttgaaaatgtgaaacttatatactatatagatgtatcaaacacagagtgatttatctattttaagcgtttatttaatcttttgttgttgattattgattatgacTAACAGCCGATAAAAAACgcaaaagtcagtgtctcagaaaattagaatattatataataagaccaattggtacttttggtacgcagtgtgggcagtgtgccaagtcctgctggaaaatgaaatctgcgccccaaaccatcactgattgtggaaagttggactgtgtgtctctccactcttcctccagactctgctctcttgATTTTTCTCaaatgaaatgttaaatgtactgatgatcagtgatggtttggagagacaggtCTGTCTTTAACATTTTTGCGCGTGTAAATGCTGCTACTTCcatattcttttatattattttgtgtatttatcttatctatttatatctattattgtagttttattctattttatattgtctatatatgtatctattttaaaattgctctttgggtgtaaactggccGGTTCTACCTCATGTACCACACGTGATGTGAAATCACAATAAAATCACCTTGAATCCGtaaatctttaaatgctttGTAAGAAAATAAGTTTTGAGATTTTTTGAATCAAAATTAGaacatttcacttgctaagatttagttttctcaggggctttattttatttgttttattattttttttatttatttatttatgcacagtacattaaataaaaacataataaagacaAAAGTTGTAGtaatacaaatagaaataaaaaaaaggaaagtacAAAAAAGCAACAGCAGAGCTTGTATTAGGGCACTTTCCCAttgtatttaaatgaattatattttaagtaaatatacaaaatatgaaGGAGATTAGGAATTGGAAGGGGGAAAGTTGATTAATTAATAggtagtttaataaatacagaattgCAATAAATTCACATTGCAATAAAGAATtctatttttcctatttttaaaggtgtaatctgtttatttttttactgttttaccttCATTAGTCGTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU87464 False 1665 lncRNA 0.35 3 18266239 18329102
TU87465 True 1838 lncRNA 0.36 4 18266239 18329102

Neighbor

gene id symbol gene type direction distance location
LOC111192973 NA coding upstream 14888 18215692 ~ 18251351 (+)
LOC111192978 NA coding upstream 53163 18196755 ~ 18213076 (+)
LOC107197388 NA coding upstream 73069 18176227 ~ 18193170 (+)
LOC103030006 LOC108437142,LOC105936201,LOC103140951,LOC107083146,LOC103468841,LOC102223636,LOC105899306,LOC105012845 coding upstream 94002 18161072 ~ 18172237 (+)
LOC103040205 NA coding upstream 134229 17984965 ~ 18132010 (+)
LOC103027278 NA coding downstream 302310 18631412 ~ 18634243 (+)
LOC111192977 NA coding downstream 323026 18652128 ~ 18654689 (+)
LOC111192972 NA coding downstream 328174 18657276 ~ 18669434 (+)
LOC107197347 NA coding downstream 340330 18669432 ~ 18683116 (+)
LOC103035713 LOC108255900,LOC108435871,LOC105013149,LOC106606986,LOC107731682,LOC105910936,LOC103375364 coding downstream 358155 18687257 ~ 18706546 (+)
G64787 NA non-coding upstream 35756 18198996 ~ 18230483 (+)
G64776 NA non-coding upstream 142340 18114974 ~ 18123899 (+)
G64754 NA non-coding upstream 204909 17972579 ~ 18061330 (+)
G64770 NA non-coding upstream 214996 18050049 ~ 18051243 (+)
G64766 NA non-coding upstream 237484 18028086 ~ 18028755 (+)
G64797 socs3,LOC103047157,LOC107552116,LOC107671257,LOC107698761 non-coding downstream 5414 18334516 ~ 18355513 (+)
G64799 NA non-coding downstream 15850 18344952 ~ 18345563 (+)
G64803 NA non-coding downstream 33735 18362837 ~ 18438856 (+)
G64816 NA non-coding downstream 72975 18402077 ~ 18424329 (+)
G64806 NA non-coding downstream 74786 18403888 ~ 18414135 (+)
G64698 rac1,RAC1,LOC105898786,LOC108437155,LOC106601744,LOC107664344 other upstream 546327 17690209 ~ 17719912 (+)
LOC103030423 pcyt2,LOC108437168,LOC108277112,LOC107701914,LOC105013038,LOC107576708,LOC107729574,LOC106601930 other upstream 1378044 16833290 ~ 16888195 (+)
G64449 NA other upstream 1390298 16873087 ~ 16875941 (+)
G64431 NA other upstream 1512679 16753043 ~ 16753560 (+)
G64289 NA other upstream 1823790 16439220 ~ 16442449 (+)
G64990 si:dkey-282h22.5,LOC108261121 other downstream 227026 18556128 ~ 18623499 (+)
LOC103045528 NA other downstream 894107 19223209 ~ 19278071 (+)
LOC103044219 mcrip1,fam195b,LOC107654575 other downstream 947700 19276802 ~ 19279517 (+)
alyref alyref,LOC107743018,LOC107665635,LOC107748861 other downstream 951190 19280292 ~ 19340879 (+)
LOC103037311 LOC103037311,LOC103358095,LOC106514816,LOC107386321 other downstream 1451561 19780663 ~ 19794325 (+)

Expression


Co-expression Network