G64822 (cyth1,LOC103392816,LOC108277039)


Basic Information

Item Value
gene id G64822
gene name cyth1,LOC103392816,LOC108277039
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 18418747 ~ 18422187 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU87505
GAGAGCTTGGACCAGGTTCAGGTCTGTGAACTCGTGTAGCTCCACGAAAGCGTGCAGAACCTGGATGTTGAAATCATCCCTCTCTCCGAGGTAATCCCCtatggctgttttattcagtccCTCCCCCTTATACAGGAACTGGGCGATGTCATCGCTGGTGTTCTTCAGAAGGTCATTTTCAATCAGGAACTGGATCCCCTTCTTGGGGTCCATGTTGAACTTCTTGCGACCCATGGCCACCTGCTTATTCCTCTGCATATTCTTCCTCTCCTCAGTGGACCCCAGGTTCTCGATCTCACTGGTGACCTCGGCTATCTCATCCTTTAA

Function

symbol description
cyth1 Enables guanyl-nucleotide exchange factor activity. Acts upstream of or within regulation of cell adhesion. Located in cytoplasm and plasma membrane.

NR:

description
PREDICTED: cytohesin-1 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU87505 True 327 lncRNA 0.51 4 18418747 18422187

Neighbor

gene id symbol gene type direction distance location
LOC111192973 NA coding upstream 167396 18215692 ~ 18251351 (+)
LOC111192978 NA coding upstream 205671 18196755 ~ 18213076 (+)
LOC107197388 NA coding upstream 225577 18176227 ~ 18193170 (+)
LOC103030006 LOC108437142,LOC105936201,LOC103140951,LOC107083146,LOC103468841,LOC102223636,LOC105899306,LOC105012845 coding upstream 246510 18161072 ~ 18172237 (+)
LOC103040205 NA coding upstream 286737 17984965 ~ 18132010 (+)
LOC103027278 NA coding downstream 209225 18631412 ~ 18634243 (+)
LOC111192977 NA coding downstream 229941 18652128 ~ 18654689 (+)
LOC111192972 NA coding downstream 235089 18657276 ~ 18669434 (+)
LOC107197347 NA coding downstream 247245 18669432 ~ 18683116 (+)
LOC103035713 LOC108255900,LOC108435871,LOC105013149,LOC106606986,LOC107731682,LOC105910936,LOC103375364 coding downstream 265070 18687257 ~ 18706546 (+)
G64806 NA non-coding upstream 4612 18403888 ~ 18414135 (+)
G64794 NA non-coding upstream 33928 18306905 ~ 18384819 (+)
G64797 socs3,LOC103047157,LOC107552116,LOC107671257,LOC107698761 non-coding upstream 63234 18334516 ~ 18355513 (+)
G64799 NA non-coding upstream 73184 18344952 ~ 18345563 (+)
G64792 NA non-coding upstream 89645 18266239 ~ 18329102 (+)
G64834 NA non-coding downstream 82764 18504951 ~ 18505727 (+)
G64980 NA non-coding downstream 114480 18536667 ~ 18616158 (+)
G64991 NA non-coding downstream 144840 18567027 ~ 18569490 (+)
G65011 NA non-coding downstream 232591 18654778 ~ 18734150 (+)
G65019 NA non-coding downstream 289427 18711614 ~ 18759292 (+)
G64698 rac1,RAC1,LOC105898786,LOC108437155,LOC106601744,LOC107664344 other upstream 698835 17690209 ~ 17719912 (+)
LOC103030423 pcyt2,LOC108437168,LOC108277112,LOC107701914,LOC105013038,LOC107576708,LOC107729574,LOC106601930 other upstream 1530552 16833290 ~ 16888195 (+)
G64449 NA other upstream 1542806 16873087 ~ 16875941 (+)
G64431 NA other upstream 1665187 16753043 ~ 16753560 (+)
G64289 NA other upstream 1976298 16439220 ~ 16442449 (+)
G64990 si:dkey-282h22.5,LOC108261121 other downstream 133941 18556128 ~ 18623499 (+)
LOC103045528 NA other downstream 801022 19223209 ~ 19278071 (+)
LOC103044219 mcrip1,fam195b,LOC107654575 other downstream 854615 19276802 ~ 19279517 (+)
alyref alyref,LOC107743018,LOC107665635,LOC107748861 other downstream 858105 19280292 ~ 19340879 (+)
LOC103037311 LOC103037311,LOC103358095,LOC106514816,LOC107386321 other downstream 1358476 19780663 ~ 19794325 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000112_02740099_02758394 CYTH1, CYTH1A, CYH1 coding CI01000112 null 2740099 ~ 2758394 (+)