G64841 (rac1b,rac1,LOC103481976,LOC106531821,LOC102217008,LOC105935606)


Basic Information

Item Value
gene id G64841
gene name rac1b,rac1,LOC103481976,LOC106531821,LOC102217008,LOC105935606
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 17707996 ~ 17715442 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU87528
cagatcaaaaacacatcTGTCTGAGGGTAGGAGAGGGGGCGGATCCTGTCGTAGCCTTCCTGTCCTGCTGTATCCCACAGACCCAGGTTAACTGGTTTTCCATCCACCATCACATTCGCAGAGTAGTTATCAAATACTGTGGGGATGTCCTCTCCTGGGAAAGCGTTGGTGGTGTAGCTGATCAGCAGACATGTTTTACCTACAGCCCCGTctcccaccaccacacac

Function

symbol description
rac1b Predicted to enable GTP binding activity; GTPase activity; and protein kinase binding activity. Predicted to be involved in several processes, including Rac protein signal transduction; cytoskeleton organization; and engulfment of apoptotic cell. Predicted to act upstream of or within small GTPase mediated signal transduction. Predicted to be active in several cellular components, including cell cortex; cytoplasmic vesicle; and dendritic spine. Human ortholog(s) of this gene implicated in autosomal dominant mental retardation 48; colon adenocarcinoma; and pancreatic adenocarcinoma. Orthologous to human RAC1 (Rac family small GTPase 1).
rac1 Enables GTP binding activity; GTPase activity; and enzyme binding activity. Involved in several processes, including plasma membrane bounded cell projection assembly; positive regulation of cellular component biogenesis; and regulation of cell migration. Acts upstream of or within actin cytoskeleton organization; positive regulation of lamellipodium assembly; and ruffle organization. Located in several cellular components, including recycling endosome membrane; ruffle membrane; and trans-Golgi network. Is extrinsic component of cytoplasmic side of plasma membrane. Is active in glutamatergic synapse and postsynapse. Colocalizes with actin filament. Implicated in autosomal dominant mental retardation 48; colon adenocarcinoma; and pancreatic adenocarcinoma. Biomarker of colon adenocarcinoma; colon adenoma; colorectal cancer; and pancreatic ductal adenocarcinoma.

NR:

description
PREDICTED: enkurin domain-containing protein 1 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU87528 True 228 lncRNA 0.52 4 17707996 17715442

Neighbor

gene id symbol gene type direction distance location
cep112 cep112 coding downstream 400920 17103295 ~ 17307076 (-)
LOC103042974 LOC108437161 coding downstream 611171 17045514 ~ 17096825 (-)
LOC103039070 NA coding downstream 762331 16895580 ~ 16945665 (-)
LOC111192875 LOC108437882 coding downstream 1000921 16696081 ~ 16707075 (-)
LOC103027149 LOC103027149 coding downstream 1047489 16654113 ~ 16660507 (-)
stk19 stk19,LOC106601743,LOC106601674 coding upstream 5687 17721129 ~ 17731699 (-)
LOC111192974 tvp23b,LOC108437154,LOC105899270 coding upstream 67310 17782752 ~ 17797809 (-)
LOC111192966 NA coding upstream 91632 17807074 ~ 17817082 (-)
ush1g ush1g,ush1ga,LOC107556601,LOC107698769,LOC107568596 coding upstream 124737 17840179 ~ 17855162 (-)
hid1 hid1,LOC107710705,LOC107698779 coding upstream 169178 17884620 ~ 17920811 (-)
G64692 NA non-coding downstream 29331 17677102 ~ 17678665 (-)
G64688 NA non-coding downstream 37579 17606894 ~ 17670417 (-)
G64694 NA non-coding downstream 65767 17640160 ~ 17642229 (-)
G64682 NA non-coding downstream 126404 17578797 ~ 17581592 (-)
G64632 NA non-coding downstream 534434 17172649 ~ 17173562 (-)
G64857 NA non-coding upstream 53805 17769247 ~ 17815728 (-)
G64867 NA non-coding upstream 95734 17811176 ~ 17953544 (-)
G64882 NA non-coding upstream 165008 17880450 ~ 17882420 (-)
G64898 NA non-coding upstream 262105 17977547 ~ 17978089 (-)
G64902 NA non-coding upstream 284114 17999556 ~ 17999808 (-)
LOC103043390 NA other downstream 18684 17678814 ~ 17689312 (-)
LOC111192911 cyth3b,cyth3,LOC107556600,LOC106518738,LOC108239256,LOC107376516,LOC102303741,LOC108437157,LOC108258062 other downstream 43435 17535296 ~ 17664561 (-)
G64492 NA other downstream 820093 16882335 ~ 16887903 (-)
G64387 NA other downstream 1122349 16585065 ~ 16585647 (-)
LOC103027187 NA other downstream 1840201 15671306 ~ 15867795 (-)
G64886 NA other upstream 213065 17928507 ~ 17931170 (-)
LOC111192976 NA other upstream 909433 18624875 ~ 18712520 (-)
LOC111192971 LOC108435850 other upstream 922865 18638307 ~ 18650343 (-)
G65184 LOC108435872,LOC108274344,LOC107731677,LOC107558868 other upstream 1182743 18898185 ~ 19023658 (-)
G65231 alyref,LOC107665635,LOC107748861,LOC107743018,LOC107654581 other upstream 1564860 19280302 ~ 19284032 (-)

Expression


Co-expression Network