G64882


Basic Information

Item Value
gene id G64882
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 17880450 ~ 17882420 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU87582
CACAaagattctggtttgtttaacactttttatttactaaataataataaataattcggcatgtgttcctgtatagcttaaatttagtctttaatattaaatttacaatgtaaaaaaatcatcaaaagaaagaaaagaataaacaagagtgaaaagctgtgtgtatatcgtcgctgtccaataaaaaaaacaagtatctccatttttaccCATTTTTTAGGCTACTACATAATGTATATTCAGCAAACCAACTGTGTCAAGATTCcctgatgaacggaccaatagaatttctccaaaatgacctgaaataaactatttttacattggcttccactgaaagtttagaaggttttttctctcctgtaaagttgctgtaaagttttggagataagtgtttttaattggacagtgatgaaATATACTGTCGTATTACGTTTTTTGAGGTGTGTTTTTAGTGTTATATATTAGGTGTTGTGTAGCACAGTGTGTTAATCACTGACACGACCATAAACCCACAGCAGCAGGAAACAGGAAGTGACTGATATGGTTTTATACTGAGAATATTTCACTGTAAAGTGAAAACGTTGCCTCACGCTTTATGACATCATGAGGGATTGCGTCTGTGGGCTGATGTGGGCTGTGTCATCCGTCAATATAGTtttataaatcaataatttaataatttatcatGAGATCAATAGAAATTCAGACGTCAGTCAATTACAatatctttgtttctttctgtttatgGCAACAGCATGTGGAACTGTACATGCTTATTCATTGAAAccaggggtgggcgatatggccctaaaataatatcacgatatttcatggtattttcatgattatgATACTCTtcacgatatgacaaaaaaaaaaatcaagaatacac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU87582 True 895 lncRNA 0.33 2 17880450 17882420

Neighbor

gene id symbol gene type direction distance location
ush1g ush1g,ush1ga,LOC107556601,LOC107698769,LOC107568596 coding downstream 25288 17840179 ~ 17855162 (-)
LOC111192966 NA coding downstream 63368 17807074 ~ 17817082 (-)
LOC111192974 tvp23b,LOC108437154,LOC105899270 coding downstream 82641 17782752 ~ 17797809 (-)
stk19 stk19,LOC106601743,LOC106601674 coding downstream 148751 17721129 ~ 17731699 (-)
cep112 cep112 coding downstream 573374 17103295 ~ 17307076 (-)
hid1 hid1,LOC107710705,LOC107698779 coding upstream 2200 17884620 ~ 17920811 (-)
LOC103047157 socs3,LOC103047157,LOC107552116,LOC107671257,LOC107698761 coding upstream 470913 18353333 ~ 18356495 (-)
LOC103034879 usp36,LOC107717487 coding upstream 607232 18489652 ~ 18536743 (-)
LOC103028836 NA coding upstream 656483 18538903 ~ 18550973 (-)
LOC103028209 NA coding upstream 685257 18567677 ~ 18575169 (-)
G64857 NA non-coding downstream 64722 17769247 ~ 17815728 (-)
G64835 rac1,RAC1,LOC105898786,LOC108437155,LOC106601744,LOC107664344 non-coding downstream 160539 17690229 ~ 17719911 (-)
G64841 rac1b,rac1,LOC103481976,LOC106531821,LOC102217008,LOC105935606 non-coding downstream 165008 17707996 ~ 17715442 (-)
G64692 NA non-coding downstream 201785 17677102 ~ 17678665 (-)
G64688 NA non-coding downstream 210033 17606894 ~ 17670417 (-)
G64898 NA non-coding upstream 95127 17977547 ~ 17978089 (-)
G64902 NA non-coding upstream 117136 17999556 ~ 17999808 (-)
G64904 NA non-coding upstream 141654 18024074 ~ 18024657 (-)
G64926 NA non-coding upstream 290112 18172532 ~ 18173990 (-)
G64936 NA non-coding upstream 316643 18199063 ~ 18230483 (-)
LOC103043390 NA other downstream 191138 17678814 ~ 17689312 (-)
LOC111192911 cyth3b,cyth3,LOC107556600,LOC106518738,LOC108239256,LOC107376516,LOC102303741,LOC108437157,LOC108258062 other downstream 215889 17535296 ~ 17664561 (-)
G64492 NA other downstream 992547 16882335 ~ 16887903 (-)
G64387 NA other downstream 1294803 16585065 ~ 16585647 (-)
LOC103027187 NA other downstream 2012655 15671306 ~ 15867795 (-)
G64886 NA other upstream 46087 17928507 ~ 17931170 (-)
LOC111192976 NA other upstream 742455 18624875 ~ 18712520 (-)
LOC111192971 LOC108435850 other upstream 755887 18638307 ~ 18650343 (-)
G65184 LOC108435872,LOC108274344,LOC107731677,LOC107558868 other upstream 1015765 18898185 ~ 19023658 (-)
G65231 alyref,LOC107665635,LOC107748861,LOC107743018,LOC107654581 other upstream 1397882 19280302 ~ 19284032 (-)

Expression


Co-expression Network