G64938


Basic Information

Item Value
gene id G64938
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 18203144 ~ 18222192 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU87649
atataatcaagaggaagatggatgatcacaaaccatcaaaccaccaaactgaactgcttgaatttttacaccaggagtaaagcagcataaagttatccaaaagcagtgtgtaagactggtggaggagaacatgatgacaagatgcatgaaaaaaaaaaactgtgattaaaaaccagggttattccaccaaatattgattatttctgaactcttaaaactttatgaatatgaacttgttttctttgcattatttgaggtctgaaagctctgcatcttttttttattatttcagcctcttttgttattttgaaatgctctcttaatttcttccagagctgtatatttgtagTATATAACTAGTAATAATATCAGATATACAGATCCATGAAGAATTTGAGGGCGTGTGATCATGCATCttcttcaatttggtaaaatcaaagaaactcacacaTTTTAAGTGGcttttgcaactttttttgcaactttatcaacacaacacacacatacaacacagaAAACCAACAACAAGATAACAGATAAAGTATTAAACACTCCAGACTCCAAGTCTATTTATCCTTCCATGGCCATTCTGGCGATATCGCCTCTTCTGGACTTTGCAGAAACTTCAAATTTCTCAATGGCCTGGTTGCAGgtctttGATGTGaaatttctgtctctctttctgcagcttGAGGAACTCCTCCACCGTCAGCTCCTCCACTGCTTTCTTCAGCAGGATGAAGTTACAGGCTGGAGAGTGAGACCTGTGCTCCTTCC

Function

NR:

description
RNA-directed DNA polymerase from mobile element jockey

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU87649 True 777 lncRNA 0.37 3 18203144 18222192

Neighbor

gene id symbol gene type direction distance location
hid1 hid1,LOC107710705,LOC107698779 coding downstream 282333 17884620 ~ 17920811 (-)
ush1g ush1g,ush1ga,LOC107556601,LOC107698769,LOC107568596 coding downstream 347982 17840179 ~ 17855162 (-)
LOC111192966 NA coding downstream 386062 17807074 ~ 17817082 (-)
LOC111192974 tvp23b,LOC108437154,LOC105899270 coding downstream 405335 17782752 ~ 17797809 (-)
stk19 stk19,LOC106601743,LOC106601674 coding downstream 471445 17721129 ~ 17731699 (-)
LOC103047157 socs3,LOC103047157,LOC107552116,LOC107671257,LOC107698761 coding upstream 131141 18353333 ~ 18356495 (-)
LOC103034879 usp36,LOC107717487 coding upstream 267460 18489652 ~ 18536743 (-)
LOC103028836 NA coding upstream 316711 18538903 ~ 18550973 (-)
LOC103028209 NA coding upstream 345485 18567677 ~ 18575169 (-)
tspan10 NA coding upstream 364377 18586569 ~ 18590070 (-)
G64926 NA non-coding downstream 29154 18172532 ~ 18173990 (-)
G64904 NA non-coding downstream 178487 18024074 ~ 18024657 (-)
G64902 NA non-coding downstream 203336 17999556 ~ 17999808 (-)
G64898 NA non-coding downstream 225055 17977547 ~ 17978089 (-)
G64882 NA non-coding downstream 320724 17880450 ~ 17882420 (-)
G64948 NA non-coding upstream 105529 18327721 ~ 18328460 (-)
G64959 NA non-coding upstream 222434 18444626 ~ 18445767 (-)
G65067 NA non-coding upstream 337936 18560128 ~ 18560548 (-)
G65069 NA non-coding upstream 359416 18581608 ~ 18582016 (-)
G65066 NA non-coding upstream 397519 18619711 ~ 18623603 (-)
G64886 NA other downstream 271974 17928507 ~ 17931170 (-)
LOC103043390 NA other downstream 513832 17678814 ~ 17689312 (-)
LOC111192911 cyth3b,cyth3,LOC107556600,LOC106518738,LOC108239256,LOC107376516,LOC102303741,LOC108437157,LOC108258062 other downstream 538583 17535296 ~ 17664561 (-)
G64492 NA other downstream 1315241 16882335 ~ 16887903 (-)
G64387 NA other downstream 1617497 16585065 ~ 16585647 (-)
LOC111192976 NA other upstream 402683 18624875 ~ 18712520 (-)
LOC111192971 LOC108435850 other upstream 416115 18638307 ~ 18650343 (-)
G65184 LOC108435872,LOC108274344,LOC107731677,LOC107558868 other upstream 675993 18898185 ~ 19023658 (-)
G65231 alyref,LOC107665635,LOC107748861,LOC107743018,LOC107654581 other upstream 1058110 19280302 ~ 19284032 (-)
cdr2l cdr2l,LOC107665638,LOC107743016 other upstream 1083795 19305987 ~ 19370708 (-)

Expression


Co-expression Network