G64990 (si:dkey-282h22.5,LOC108261121)


Basic Information

Item Value
gene id G64990
gene name si:dkey-282h22.5,LOC108261121
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 18556128 ~ 18623499 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU87713
atggaaaccgtggcgcgcccaaagtgtaattacgatgcgcggcagtggacaaatatctattttattaaaggcgaggagacgaaactcagagatgtgcgtccggacgggactaaaattaccggaggagcacggagttcagagaaaaacagtagataattcagcctgtaattttctcagaggacgtctgagaaaaacacctacatgatcgttctggacgggaataaaatcacagaggataaaaaactccataaaagataaaattacccagaaccccCCCCGCCAGATCCGCTCATACCGGACAGTGGGTCCGGCGGGCGAGGGCCCGGAGAGGCCCCGGCACCTAACGGACTACTGAACTACCATCTGATATCAACTATTCAGCTTTTATATGAGGATATAATaaagaaattataatataatataacattattcattataattacattattatcattattaggGATGCATCGAATACGGGCCAACTAAAATTATTTGCAAATATAAGCATTTTTTGGATAAAGCGTGTTTGGATGAAGTTAAAGCacaaaataatttataccaAACGCTGATACTGAGATATACTGAGTTCTGTATTGATTCTGTATTAGTtcagtttttatattaaacataaaataaaatagtttagttaaaaagcaagagaaatgtatatttatgctatttcatttttttaaaatagagaaaaagcagcaaaatTATGAAAGACGaaatgctttatttagtttggttttgattga
>TU87714
agataAATCAGCAGGTAAAAGGTGCTCTAATCTGACGCAGGTTCTGGATAACTGGAAATACGCTATAATGCACCAGGTGAAGGACATGCTAGTGAACGATCACGCTTCTGTCCTACCTGAGTATGTGAGGATCCAGCCGCTGTCGGACGCAGTGGGAGATCTGTATAAGCAGTTCGACTCTCTGAAGGAGAATTTGGCTAAACTCTCCAGTAAGTTCGACCGGGTGGAGAGCTTCGTGGACGAACTGCAGGCTGGAAAACTCCCCAAATCCTCCTTACGGGTCGCCCCCCAGCGCCCGCCCCCCAGAACCCCCGCCAGAACCCCCCCCGCCAGATCCGCTCATACCGGACAGTGGGTCCGGCGGGCGAGGGCCCGGAGAGGCCCCGGCACCTAACGGACTACTGAACTACCATCTGATATCAACTATTCAGCTTTTATATGAGGATATAATaaagaaattataatataatataacattattcattataattacattattatcattattaggGATGCATCGAATACGGGCCAACTAAAATTATTTGCAAATATAAGCATTTTTTGGATAAAGCGTGTTTGGATGAAGTTAAAGCacaaaataatttataccaAACGCTGATACTGAGATATACTGAGTTCTGTATTGATTCTGTATTAGTtcagtttttatattaaacataaaataaaatagtttagttaaaaagcaagagaaatgtatatttatgctatttcatttttttaaaatagagaaaaagcagcaaaatTATGAAAGACGaaatgctttatttagtttggttttgattga

Function

NR:

description
si:dkey-282h22.5 precursor

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU87713 False 755 lncRNA 0.36 2 18556128 18623499
TU87714 True 805 TUCP 0.41 3 18619860 18623499

Neighbor

gene id symbol gene type direction distance location
LOC111192973 NA coding upstream 304777 18215692 ~ 18251351 (+)
LOC111192978 NA coding upstream 343052 18196755 ~ 18213076 (+)
LOC107197388 NA coding upstream 362958 18176227 ~ 18193170 (+)
LOC103030006 LOC108437142,LOC105936201,LOC103140951,LOC107083146,LOC103468841,LOC102223636,LOC105899306,LOC105012845 coding upstream 383891 18161072 ~ 18172237 (+)
LOC103040205 NA coding upstream 424118 17984965 ~ 18132010 (+)
LOC103027278 NA coding downstream 7913 18631412 ~ 18634243 (+)
LOC111192977 NA coding downstream 28629 18652128 ~ 18654689 (+)
LOC111192972 NA coding downstream 33777 18657276 ~ 18669434 (+)
LOC107197347 NA coding downstream 45933 18669432 ~ 18683116 (+)
LOC103035713 LOC108255900,LOC108435871,LOC105013149,LOC106606986,LOC107731682,LOC105910936,LOC103375364 coding downstream 63758 18687257 ~ 18706546 (+)
G64834 NA non-coding upstream 50401 18504951 ~ 18505727 (+)
G64803 NA non-coding upstream 117272 18362837 ~ 18438856 (+)
G64816 NA non-coding upstream 131799 18402077 ~ 18424329 (+)
G64822 cyth1,LOC103392816,LOC108277039 non-coding upstream 133941 18418747 ~ 18422187 (+)
G64806 NA non-coding upstream 141993 18403888 ~ 18414135 (+)
G65011 NA non-coding downstream 31279 18654778 ~ 18734150 (+)
G65019 NA non-coding downstream 88115 18711614 ~ 18759292 (+)
G65044 NA non-coding downstream 168683 18792182 ~ 18840564 (+)
G65053 NA non-coding downstream 210460 18833959 ~ 18834854 (+)
G65116 NA non-coding downstream 277953 18901452 ~ 18908686 (+)
G64698 rac1,RAC1,LOC105898786,LOC108437155,LOC106601744,LOC107664344 other upstream 836216 17690209 ~ 17719912 (+)
LOC103030423 pcyt2,LOC108437168,LOC108277112,LOC107701914,LOC105013038,LOC107576708,LOC107729574,LOC106601930 other upstream 1667933 16833290 ~ 16888195 (+)
G64449 NA other upstream 1680187 16873087 ~ 16875941 (+)
G64431 NA other upstream 1802568 16753043 ~ 16753560 (+)
G64289 NA other upstream 2113679 16439220 ~ 16442449 (+)
LOC103045528 NA other downstream 599710 19223209 ~ 19278071 (+)
LOC103044219 mcrip1,fam195b,LOC107654575 other downstream 653303 19276802 ~ 19279517 (+)
alyref alyref,LOC107743018,LOC107665635,LOC107748861 other downstream 656793 19280292 ~ 19340879 (+)
LOC103037311 LOC103037311,LOC103358095,LOC106514816,LOC107386321 other downstream 1157164 19780663 ~ 19794325 (+)
G65565 NA other downstream 2333636 20957135 ~ 20957635 (+)

Expression


Co-expression Network