LOC111192976


Basic Information

Item Value
gene id LOC111192976
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 18624875 ~ 18712520 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU87810
atatacacacactcacacaccccgAGACACAGGGACTGATCCAGCCGTCCACACACTGCGgtctcaccgctacACAGATCTGCACCAATTTCCTCCTGAAAactcctgtttatttgggtgagtaaagcacttctgtttatttacagtaagcttagattcccaaatttctccagcactaaggctggagcattagcattagcggctaacagcTCCAGAtatgctagccagggttaggtgGAGCCAACACTACTCACCTCTaaaggccgataatactcacctctgaacggggaaatagcggttagcggctaatgctaatactgctcctgtataactctgtacttcagtggagtggctttactgctccttaatacctgactgatagaattcatacataaggagcaccggattattttggggaaatttaaaggattttaggtgcaaaaaatacggtaaattaaaagtgttaaacaaatcaaaggGAATTAATGCTCTTCTATTCCTGGggtggccctgatgagtgcaagtttcatcattataatatattttatggtcctttttttgtgactgcagttgaggatatttttaaagttcttaaaacttaaaacaggaCTGACTGGCCTTTTTCttctttaagtcattttttactttgctttatttagttgagtagttcttgcttctcataatatgaaatattagaacattactcaaatagagctattcactgtacaccaactctaccttttaaaatttattttattcacctATTTGTGGATTTATTACAACAAAGATCCACAAAGCTGGAATGAATTAAAATTACGTGACATATTGTAATAAATGATGCTCATTTTTGCCTTAATTCTAATCCCAGTTTTTACATCCTCACATCCTTCATCCCTGCTTAAAAAAGCATAAACATCTGTTTTATATTGTCTAGAATAAGATATCTGCTCATTTATTTGGATCTAAAGACAGACGGAGGCTTTCCGGACAGAAATGAGATCTAGGCCTGAAATAAATCAAGATATTTATATGATTTCCCATTAAAAATCCCACATCCCACTgttctttaaaatgtactttatagtTTTGTAGCTGGGTGTATATCATTGTCATTAcacaataagaataataatataatatataataataatgtataaatctatataatttGGATATTTTCTCACACATACATCACTTAAATGCTGTTAAATCactcttaaattattatttttttttaattggctgtattCTACACTGTTACGTGTCTGcatgttcctctctctctttctctctcgcacgcttgctcgctctctctctctccctctctccctgtctctctctctataggtTGCACATCCTGTCAATCATCATTGAGCATGCTGCCGGCTAACCAATTGAGTGGAGACTGAGGCGGGACTTCCGGTATAAAAGCTGCGTGAAGGAGCTGCGCGGCGGCCTGCCGGCTCACACACTGACCACTCGTTTGAACGCTCCGTTTTTATTGTGGTTGCActctgttttattgcttttgtCAGAAACTAGTCAAGATCTTGCttctctgtgttactgaagtaGTGCTTTATTCAAAAGCTCTGTTTTGGTTCAGTCCTGAATTTTATATCTTTCTCCCGCTCAGATTGAGAACAGGTTAGACTGCGCGCGCACCTTCATTCCACCACGTAGGTAATTCATTGTATAAACACATTAGATTAAAAGGGCGGGTACCaacatatgtattttttgttttattagacTAGTGTAACTAGAcaggttttgtttgtttattcctTTTCTTTTGGGTAGTTAGGCTAGTCTCTTAAAATAGCTTagtgtgatttttgttttgttctgttcttttctttggtACCGTTCATCTTCTCTTTCTGAGGTGAGGTTAATCCAAATCATGTCTGTCTCTGATGTTTCCCCTGTTTGTTGCTGCATAActataaagtaaagaaaagcctaaataaatctaattacTTGTTCTGCTTTAAGCTGCCTGCTCTCCAGTCAATTCACTCCTTAGAAACCAGTTTCAAGTTCCACCTTAAGCGATCCATATCTAAATAATGTTACTGGTTCCGCTCTACACCCCTAGACCATGGCCTATTAAGTAGTGGGAACGTAACATACACAATGTCTGTTTAAATacacaatatgaattatttcaATACATATAGTTGTACGAAGAagtatttttgaaataaaaataagtaaaaacagcaaaagatatatattttcactCTGTACAAAAACATtctgttgtttatttaaaaaaaatgcagatttttaaTGCTCACAGATATTAGAATTCCACTGTAAATTGTTTATTGTGTATGAAATGAAATGGAATTATACATCATACATTTATCATGACCTGAAAACTTAAGCAATATgaataaatctgaataaaaaaatctgcgttcacactgcaggtaaaagtggcaCAGATCTGATCTTTTTGGTCGTTATTTGATACAGATTTATCATATACAGCGCAAgtgaaagtatttttaaacaggTTATAGCAGAactcaaaagaaaaagaattctAGACATTTatcagcattttttatttttattttgatgtttgtaaataattttgtaatatgttgtggatttggatattttaaatgtaatgtaaaattt
>XM_022671444.1
GCTGTAACTGcagggtgagagagaggggagaatgCGCGGTTGGGTCGGGTTGAGCAGAGCGGCGGGATTTCCGCACGTTTTACCGAACAGAACCGGATTCTATAACCCGGGACCGGTTCACACCCTGCCCCGAACCACCCCGACCCCGGCCCGGTACTGCGGGACCGGTACCGAACCGTACCGGGTCATCCACAACCGGGAGCAGCGCTGTTTCACCGTCAGCCTGCGGTCCGGGGCAGGTGTGGTGGACAGTGCGGTGCTAAAATACCGATACAGCACCGACCGACACGTTCACCTACTGTCCACTGCAGTCCCAGAATCCTTCAGAGGGAAAGGTGTGGCCTCTCACCTGGCAAAGGCTGCGATGGACTTTGTGGTGGAAGAAGGACTGAAAGCGACCGTCTCCTGTTGGTATATTCAAAAATATGTGGAGGAGAATCCAGGGTGTGGATATGAAGCTCATATAGAAGATTAGCTTCACTGTAAGATCAgatcagtacagtacagtatggaTTCAGATGAACAGTCTGGTTAATCTGTGGTGtgaatgttgggtttaaatcgTCACTTTTAAGCCGTCTGCCGGAGGTACAGACCGGATGTTGGATTGTTTTTAGATGATCTAATAAAAGCTGCATCTGCTGACCAGA
>XM_022671445.1
GCTGTAACTGcagggtgagagagaggggagaatgCGCGGTTGGGTCGGGTTGAGCAGAGCGGCGGGATTTCCGCACGTTTTACCGAACAGAACCGGATTCTATAACCCGGGACCGGTTCACACCCTGCCCCGAACCACCCCGACCCCGGCCCGGTACTGCGGGACCGGTACCGAACCGTACCGGGTCATCCACAACCGGGAGCAGCGCTGTTTCACCGTCAGCCTGCGGTCCGGGGCAGGTGTGGTGGACAGTGCGGTGCTAAAATACCGATACAGCACCGACCGACACGTTCACCTACTGTCCACTGCAGTCCCAGAATCCTTCAGAGGGAAAGGTGTGGCCTCTCACCTGGCAAAGGCTGCGATGGACTTTGTGGTGGAAGAAGGACTGAAAGCGACCGTCTCCTGTTGGTATATTCAAAAATATGTGGAGGAGAATCCAGGGTGTGGATATGAAGCTCATATAGAAGATTAGCTTCACTgtTGCACATCCTGTCAATCATCATTGAGCATGCTGCCGGCTAACCAATTGAGTGGAGACTGAGGCGGGACTTCCGGTATAAAAGCTGCGTGAAGGAGCTGCGCGGCGGCCTGCCGGCTCACACACTGACCACTCGTTTGAACGCTCCGTTTTTATTGTGGTTGCActctgttttattgcttttgtCAGAAACTAGTCAAGATCTTGCttctctgtgttactgaagtaGTGCTTTATTCAAAAGCTCTGTTTTGGTTCAGTCCTGAATTTTATATCTTTCTCCCGCTCAGATTGAGAACAGGTTAGACTGCGCGCGCACCTTCATTCCACCACGTAGGTAATTCATTGTATAAACACATTAGATTAAAAGGGCGGGTACCaacatatgtattttttgttttattagacTAGTGTAACTAGAcaggttttgtttgtttattcctTTTCTTTTGGGTAGTTAGGCTAGTCTCTTAAAATAGCTTagtgtgatttttgttttgttctgttcttttctttggtACCGTTCATCTTCTCTTTCTGAGGTGAGGTTAATCCAAATCATGTCTGTCTCTGATGTTTCCCCTGTTTGTTGCTGCATAActataaagtaaagaaaagcctaaataaatctaattacTTGTTCTGCTTTAAGCTGCCTGCTCTCCAGTCAATTCACTCCTTAGAAACCAGTTTCAAGTTCCACCTTAAGCGATCCATATCTAAATAATGTTACTGGTTCCGCTCTACACCCCTAGACCATGGCCTATTAAGTAGTGGGAACGTAACATACACAATGTCTGTTTAAATacacaatatgaattatttcaATACATATAGTTGTACGAAGAagtatttttgaaataaaaataagtaaaaacagcaaaagatatatattttcactCTGTACAAAAACATtctgttgtttatttaaaaaaaatgcagatttttaaTGCTCACAGATATTAGAATTCCACTGTAAATTGTTTATTGTGTATGAAATGAAATGGAATTATACATCATACATTTATCATGACCTGAAAACTTAAGCAATATgaataaatctgaataaaaaaatctgcgttcacactgcaggtaaaagtggcaCA
>XM_022671446.1
GCTGTAACTGcagggtgagagagaggggagaatgCGCGGTTGGGTCGGGTTGAGCAGAGCGGCGGGATTTCCGCACGTTTTACCGAACAGAACCGGATTCTATAACCCGGGACCGGTTCACACCCTGCCCCGAACCACCCCGACCCCGGCCCGGTACTGCGGGACCGGTACCGAACCGTACCGGGTCATCCACAACCGGGAGCAGCGCTGTTTCACCGTCAGCCTGCGGTCCGGGGGTGTGGTGGACAGTGCGGTGCTAAAATACCGATACAGCACCGACCGACACGTTCACCTACTGTCCACTGCAGTCCCAGAATCCTTCAGAGGGAAAGGTGTGGCCTCTCACCTGGCAAAGGCTGCGATGGACTTTGTGGTGGAAGAAGGACTGAAAGCGACCGTCTCCTGTTGGTATATTCAAAAATATGTGGAGGAGAATCCAGGGTGTGGATATGAAGCTCATATAGAAGATTAGCTTCACTGTAAGATCAgatcagtacagtacagtatggaTTCAGATGAACAGTCTGGTTAATCTGTGGTGtgaatgttgggtttaaatcgTCACTTTTAAGCCGTCTGCCGGAGGTACAGACCGGATGTTGGATTGTTTTTAGATGATCTAATAAAAGCTGCATCTGCTGACCAGA
>XM_022671447.1
GCTGTAACTGcagggtgagagagaggggagaatgCGCGGTTGGGTCGGGTTGAGCAGAGCGGCGGGATTTCCGCACGTTTTACCGAACAGAACCGGATTCTATAACCCGGGACCGGTTCACACCCTGCCCCGAACCACCCCGACCCCGGCCCGGTACTGCGGGACCGGTACCGAACCGTACCGGGTCATCCACAACCGGGAGCAGCGCTGTTTCACCGTCAGCCTGCGGTCCGGGGGTGTGGTGGACAGTGCGGTGCTAAAATACCGATACAGCACCGACCGACACGTTCACCTACTGTCCACTGCAGTCCCAGAATCCTTCAGAGGGAAAGGTGTGGCCTCTCACCTGGCAAAGGCTGCGATGGACTTTGTGGTGGAAGAAGGACTGAAAGCGACCGTCTCCTGTTGGTATATTCAAAAATATGTGGAGGAGAATCCAGGGTGTGGATATGAAGCTCATATAGAAGATTAGCTTCACTgtTGCACATCCTGTCAATCATCATTGAGCATGCTGCCGGCTAACCAATTGAGTGGAGACTGAGGCGGGACTTCCGGTATAAAAGCTGCGTGAAGGAGCTGCGCGGCGGCCTGCCGGCTCACACACTGACCACTCGTTTGAACGCTCCGTTTTTATTGTGGTTGCActctgttttattgcttttgtCAGAAACTAGTCAAGATCTTGCttctctgtgttactgaagtaGTGCTTTATTCAAAAGCTCTGTTTTGGTTCAGTCCTGAATTTTATATCTTTCTCCCGCTCAGATTGAGAACAGGTTAGACTGCGCGCGCACCTTCATTCCACCACGTAGGTAATTCATTGTATAAACACATTAGATTAAAAGGGCGGGTACCaacatatgtattttttgttttattagacTAGTGTAACTAGAcaggttttgtttgtttattcctTTTCTTTTGGGTAGTTAGGCTAGTCTCTTAAAATAGCTTagtgtgatttttgttttgttctgttcttttctttggtACCGTTCATCTTCTCTTTCTGAGGTGAGGTTAATCCAAATCATGTCTGTCTCTGATGTTTCCCCTGTTTGTTGCTGCATAActataaagtaaagaaaagcctaaataaatctaattacTTGTTCTGCTTTAAGCTGCCTGCTCTCCAGTCAATTCACTCCTTAGAAACCAGTTTCAAGTTCCACCTTAAGCGATCCATATCTAAATAATGTTACTGGTTCCGCTCTACACCCCTAGACCATGGCCTATTAAGTAGTGGGAACGTAACATACACAATGTCTGTTTAAATacacaatatgaattatttcaATACATATAGTTGTACGAAGAagtatttttgaaataaaaataagtaaaaacagcaaaagatatatattttcactCTGTACAAAAACATtctgttgtttatttaaaaaaaatgcagatttttaaTGCTCACAGATATTAGAATTCCACTGTAAATTGTTTATTGTGTATGAAATGAAATGGAATTATACATCATACATTTATCATGACCTGAAAACTTAAGCAATATgaataaatctgaataaaaaaatctgcgttcacactgcaggtaaaagtggcaCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU87810 True 2652 lncRNA 0.35 3 18624875 18712520
XM_022671444.1 False 650 mRNA 0.53 3 18627778 18629969
XM_022671445.1 False 1587 mRNA 0.43 4 18625075 18629969
XM_022671446.1 False 647 mRNA 0.53 3 18627778 18629969
XM_022671447.1 False 1584 mRNA 0.43 4 18625075 18629969

Neighbor

gene id symbol gene type direction distance location
tspan10 NA coding downstream 34805 18586569 ~ 18590070 (-)
LOC103028209 NA coding downstream 49706 18567677 ~ 18575169 (-)
LOC103028836 NA coding downstream 73902 18538903 ~ 18550973 (-)
LOC103034879 usp36,LOC107717487 coding downstream 88132 18489652 ~ 18536743 (-)
LOC103047157 socs3,LOC103047157,LOC107552116,LOC107671257,LOC107698761 coding downstream 268380 18353333 ~ 18356495 (-)
LOC103035404 zgc:153845,LOC103035404,LOC108435855,LOC104925609,LOC106601411 coding upstream 4982 18717502 ~ 18718630 (-)
LOC103035518 nptx1l,LOC108435874 coding upstream 398613 19111133 ~ 19121460 (-)
sema3c sema3c,LOC107680038,LOC107694195,LOC106576426 coding upstream 696778 19409298 ~ 19515383 (-)
lhfpl3 lhfpl3 coding upstream 953039 19665559 ~ 19714443 (-)
guca1a guca1a,LOC107590762,LOC107755893 coding upstream 1020235 19732755 ~ 19738419 (-)
G65066 NA non-coding downstream 1272 18619711 ~ 18623603 (-)
G65069 NA non-coding downstream 42859 18581608 ~ 18582016 (-)
G65067 NA non-coding downstream 64327 18560128 ~ 18560548 (-)
G64959 NA non-coding downstream 179108 18444626 ~ 18445767 (-)
G64948 NA non-coding downstream 296415 18327721 ~ 18328460 (-)
G65102 NA non-coding upstream 47280 18759800 ~ 18760297 (-)
G65103 NA non-coding upstream 47851 18760371 ~ 18816516 (-)
G65108 NA non-coding upstream 69351 18781871 ~ 18836432 (-)
G65111 NA non-coding upstream 121327 18833847 ~ 18835436 (-)
G65185 NA non-coding upstream 189107 18901627 ~ 18908694 (-)
G64886 NA other downstream 693705 17928507 ~ 17931170 (-)
LOC103043390 NA other downstream 935563 17678814 ~ 17689312 (-)
LOC111192911 cyth3b,cyth3,LOC107556600,LOC106518738,LOC108239256,LOC107376516,LOC102303741,LOC108437157,LOC108258062 other downstream 960314 17535296 ~ 17664561 (-)
G64492 NA other downstream 1736972 16882335 ~ 16887903 (-)
G64387 NA other downstream 2039228 16585065 ~ 16585647 (-)
G65184 LOC108435872,LOC108274344,LOC107731677,LOC107558868 other upstream 185665 18898185 ~ 19023658 (-)
G65231 alyref,LOC107665635,LOC107748861,LOC107743018,LOC107654581 other upstream 567782 19280302 ~ 19284032 (-)
cdr2l cdr2l,LOC107665638,LOC107743016 other upstream 593467 19305987 ~ 19370708 (-)
ndufb2 ndufb2 other upstream 887694 19600214 ~ 19605725 (-)
llph llph other upstream 1082634 19795154 ~ 19799602 (-)

Expression


Co-expression Network