LOC111192971 (LOC108435850)


Basic Information

Item Value
gene id LOC111192971
gene name LOC108435850
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 18638307 ~ 18650343 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU87843
cacacagcatgTCCTGCAATAATGGGCCAAATGCTGCTGCTATGTTTACAGCCAGCCTGACGAGCaacagcttcagcttcagctgtGAGCTATTAAAAACCCTCAGACCCCACAGCTGAACACAAACCAGTACTGAGGGACTGGAGATACAAGGAAAGATCACAGCAACCCAGTTATACCATCTATACCATCTATACCATCTATACCATCTTTACCATCGATATCATCTAAACTACAGGACAAACCAGCTGAGATCCTGAGACCTCTAACTTCTGTCTGTCTACAATTCCTGAGTTTTAACTGATGGCCTAATAAATTATCAACACAATGGAGAGCAGTGTGACGGGCGTGACGGTGGTTCTGCTGGTGCCGGCGGTGGTGCTGGTGACTGCGGGGATATTTTACCTGTATGGAGTGATACTGCGGATGCTGAGGAAAACAACAGTGCGGAATAAAGTAGTGCTAATAACAGACTCAGCGTCAGCTCTGGGGAACGagtGCGCAAAACTGTTCCACAAGGGTGGAGCTCAGCTGATCCTCTGTGGGAAGAGCTGGGAAAAGCTAGAAGATCTGGCAGAACAGCTGGCAAACGAATCAGATCCAACTTTAACGTTCCCTCCTAAGTTAGTGGAGCTGGATTTCAGTGATACGGAGTCTCTGCCGGACATGGTCTCGGATGTTCTGGACTGTTACGGCTGTCTGGACGTGCTGATATTTAACAGCAGTATGAAGGTGAAGGCTCCcgcacacacactgtctctggAGATAGACAGGCTGGTGATGGATACTAACTACTTTGGACCCGTCACTCTGGCTAAAGG
>XM_022671435.1
TTACAGCCAGCCTGACGAGCaacagcttcagcttcagctgtGAGCTATTAAAAACCCTCAGACCCCACAGCTGAACACAAACCAGTACTGAGGGACTGGAGATACAAGGAAAGATCACAGCAACCCAGTTATACCATCTATACCATCTTTACCATCTTTACCATCTTTACCATCTATACCATCTATACCATCTATACCATCTATACCATCTATACCATCTTTACCATCGATATCATCTAAACTACAGGACAAACCAGCTGAGATCCTGAGACCTCTAACTTCTGTCTGTCTACAATTCCTGAGTTTTAACTGATGGCCTAATAAATTATCAACACAATGGAGAGCAGTGTGAAGACGGGCGTGACGGTGGTTCTGCTGGTGCCGGCGGTGGTGCTGGTGACTGCGGGGATATTTTACCTGTATGGAGTGATACTGCGGATGCTGAGGAAAACAACAGTGCGGAATAAAGTAGTGCTAATAACAGACTCAGCGTCAGCTCTGGGGAACGagtGCGCAAAACTGTTCCACAAGGGTGGAGCTCAGCTGATCCTCTGTGGGAAGAGCTGGGAAAAGCTAGAAGATCTGGCAGAACAGCTGGCAAACGAATCAGATCCAACTTTAACGTTCCCTCCTAAGTTAGTGGAGCTGGATTTCAGTGATACGGAGTCTCTGCCGGACATGGTCTCGGATGTTCTGGACTGTTACGGCTGTCTGGACGTGCTGATATTTAACAGCAGTATGAAGGTGAAGGCTCCcgcacacacactgtctctggAGATAGACAGGCTGGTGATGGATACTAACTACTTTGGACCCGTCACTCTGGCTAAAGGAGTCCTGCCCTCCATGATCAGCAGAAGATCTGGACACATCCTCCTGGTGAACAGCATCCAGGGGAAACTCACCGTACCGTTCCGTACCACCTacgcTGCTTCTAAACATGCAGTGCAGGCTTTCTTCGACTGTCTCAGAGCTGAAGTTCAGGAGTACGGAATCTCCGTCAGCACCATCAGCCACACCTTCATCACCACAGCTCCATCCTCCATACAGTCCACAACCAGCACCTCCAGCAACTCCAACACCTCCAAATCCATCCTGTCAGATCTCTCCAGACAGCAGCATCACGGCGTCTCGGCGGCGGAAATGGCCGGAGAACTTCTGAGAACCCTGAGCAGCAAAAACAACGAGATCATCATGGCCAACTTTCTCTCCAGAGCTGCCATCTACGCCAGATCCTTCTGCCCCAACTTCTTCTTCTCTGTGATTTCAGCCGGAGTGAGGAACGCTGGAGATATGGAGTGATGGACACTGATACTACCTGACTCTATATAAACCTGTctatataaaactaataaaatccaTCAGTCTGTAAATACTGGATACAAACTAGGTTATTTTGGGTTAAACAAAtagctgcacccagaaggaatcagtTATCTTACAGTCTATTatcgtttaaacagcagcagagcttctgaatatatctacactgatgggcgtggtgttctggaaatgaggtgtgttcaggt
>XM_022671436.1
TTTACAGCCAGCCTGACGAGCaacagcttcagcttcagctgtGAGCTATTAAAAACCCTCAGACCCCACAGCTGAACACAAACCAGTACTGAGGGACTGGAGATACAAGGAAAGATCACAGCAACCCAGTTATACCATCTATACCATCTTTACCATCTTTACCATCTTTACCATCTATACCATCTATACCATCTATACCATCTATACCATCTATACCATCTTTACCATCGATATCATCTAAACTACAGGACAAACCAGCTGAGATCCTGAGACCTCTAACTTCTGTCTGTCTACAATTCCTGAGTTTTAACTGATGGCCTAATAAATTATCAACACAATGGAGAGCAGTGTGACGGGCGTGACGGTGGTTCTGCTGGTGCCGGCGGTGGTGCTGGTGACTGCGGGGATATTTTACCTGTATGGAGTGATACTGCGGATGCTGAGGAAAACAACAGTGCGGAATAAAGTAGTGCTAATAACAGACTCAGCGTCAGCTCTGGGGAACGagtGCGCAAAACTGTTCCACAAGGGTGGAGCTCAGCTGATCCTCTGTGGGAAGAGCTGGGAAAAGCTAGAAGATCTGGCAGAACAGCTGGCAAACGAATCAGATCCAACTTTAACGTTCCCTCCTAAGTTAGTGGAGCTGGATTTCAGTGATACGGAGTCTCTGCCGGACATGGTCTCGGATGTTCTGGACTGTTACGGCTGTCTGGACGTGCTGATATTTAACAGCAGTATGAAGGTGAAGGCTCCcgcacacacactgtctctggAGATAGACAGGCTGGTGATGGATACTAACTACTTTGGACCCGTCACTCTGGCTAAAGGAGTCCTGCCCTCCATGATCAGCAGAAGATCTGGACACATCCTCCTGGTGAACAGCATCCAGGGGAAACTCACCGTACCGTTCCGTACCACCTacgcTGCTTCTAAACATGCAGTGCAGGCTTTCTTCGACTGTCTCAGAGCTGAAGTTCAGGAGTACGGAATCTCCGTCAGCACCATCAGCCACACCTTCATCACCACAGCTCCATCCTCCATACAGTCCACAACCAGCACCTCCAGCAACTCCAACACCTCCAAATCCATCCTGTCAGATCTCTCCAGACAGCAGCATCACGGCGTCTCGGCGGCGGAAATGGCCGGAGAACTTCTGAGAACCCTGAGCAGCAAAAACAACGAGATCATCATGGCCAACTTTCTCTCCAGAGCTGCCATCTACGCCAGATCCTTCTGCCCCAACTTCTTCTTCTCTGTGATTTCAGCCGGAGTGAGGAACGCTGGAGATATGGAGTGATGGACACTGATACTACCTGACTCTATATAAACCTGTctatataaaactaataaaatccaTCAGTCTGTAAATACTGGATACAAACTAGGTTATTTTGGGTTAAACAAAtagctgcacccagaaggaatcagtTATCTTACAGTCTATTatcgtttaaacagcagcagagcttctgaatatatctacactgatgggcgtggtgttctggaaatgaggtgtgttcaggt
>XM_022671437.1
TGTTTACAGCCAGCCTGACGAGCaacagcttcagcttcagctgtGAGCTATTAAAAACCCTCAGACCCCACAGCTGAACACAAACCAGTACTGAGGGACTGGAGATACAAGGAAAGATCACAGCAACCCAGTTATACCATCTATACCATCTTTACCATCTTTACCATCTTTACCATCTATACCATCTATACCATCTATACCATCTATACCATCTATACCATCTTTACCATCGATATCATCTAAACTACAGGACAAACCAGCTGAGATCCTGAGACCTCTAACTTCTGTCTGTCTACAATTCCTGAGTTTTAACTGATGGCCTAATAAATTATCAACACAATGGAGAGCAGTGTGAAGACGGGCGTGACGGTGGTTCTGCTGGTGCCGGCGGTGGTGCTGGTGACTGCGGGGATATTTTACCTGTATGGAGTGATACTGCGGATGCTGAGGAAAACAACAGTGCGGAATAAAGTAGTGCTAATAACAGACTCAGCGTCAGCTCTGGGGAACGagtGCGCAAAACTGTTCCACAAGGGTGGAGCTCAGCTGATCCTCTGTGGGAAGAGCTGGGAAAAGCTAGAAGATCTGGCAGAACAGCTGGCAAACGAATCAGATCCAACTTTAACGTTCCCTCCTAAGTTAGTGGAGCTGGATTTCAGTGATACGGAGTCTCTGCCGGACATGGTCTCGGATGTTCTGGACTGTTACGGCTGTCTGGACGTGCTGATATTTAACAGCAGTATGAAGGTGAAGGCTCCcgcacacacactgtctctggAGATAGACAGGCTGGTGATGGATACTAACTACTTTGGACCCGTCACTCTGGCTAAAGGAGTCCTGCCCTCCATGATCAGCAGAAGATCTGGACACATCCTCCTGGTGAACAGCATCCAGGGGAAACTCACCGTACCGTTCCGTACCACCTATCTCTCCAGACAGCAGCATCACGGCGTCTCGGCGGCGGAAATGGCCGGAGAACTTCTGAGAACCCTGAGCAGCAAAAACAACGAGATCATCATGGCCAACTTTCTCTCCAGAGCTGCCATCTACGCCAGATCCTTCTGCCCCAACTTCTTCTTCTCTGTGATTTCAGCCGGAGTGAGGAACGCTGGAGATATGGAGTGATGGACACTGATACTACCTGACTCTATATAAACCTGTctatataaaactaataaaatccaTCAGTCTGTAAATACTGGATACAAACTAGGTTATTTTGGGTTAAACAAAtagctgcacccagaaggaatcagtTATCTTACAGTCTATTatcgtttaaacagcagcagagcttctgaatatatctacactgatgggcgtggtgttctggaaatgaggtgtgttcaggt

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0005576 extracellular region cellular_component
GO:0016491 oxidoreductase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU87843 False 821 TUCP 0.48 6 18643371 18650343
XM_022671435.1 True 1529 mRNA 0.48 8 18638307 18650298
XM_022671436.1 False 1527 mRNA 0.48 8 18638307 18650299
XM_022671437.1 False 1355 mRNA 0.47 7 18638307 18650301

Neighbor

gene id symbol gene type direction distance location
tspan10 NA coding downstream 48237 18586569 ~ 18590070 (-)
LOC103028209 NA coding downstream 63138 18567677 ~ 18575169 (-)
LOC103028836 NA coding downstream 87334 18538903 ~ 18550973 (-)
LOC103034879 usp36,LOC107717487 coding downstream 101564 18489652 ~ 18536743 (-)
LOC103047157 socs3,LOC103047157,LOC107552116,LOC107671257,LOC107698761 coding downstream 281812 18353333 ~ 18356495 (-)
LOC103035404 zgc:153845,LOC103035404,LOC108435855,LOC104925609,LOC106601411 coding upstream 67159 18717502 ~ 18718630 (-)
LOC103035518 nptx1l,LOC108435874 coding upstream 460790 19111133 ~ 19121460 (-)
sema3c sema3c,LOC107680038,LOC107694195,LOC106576426 coding upstream 758955 19409298 ~ 19515383 (-)
lhfpl3 lhfpl3 coding upstream 1015216 19665559 ~ 19714443 (-)
guca1a guca1a,LOC107590762,LOC107755893 coding upstream 1082412 19732755 ~ 19738419 (-)
G65066 NA non-coding downstream 14704 18619711 ~ 18623603 (-)
G65069 NA non-coding downstream 56291 18581608 ~ 18582016 (-)
G65067 NA non-coding downstream 77759 18560128 ~ 18560548 (-)
G64959 NA non-coding downstream 192540 18444626 ~ 18445767 (-)
G64948 NA non-coding downstream 309847 18327721 ~ 18328460 (-)
G65064 NA non-coding upstream 54797 18705140 ~ 18709436 (-)
G65096 NA non-coding upstream 61237 18711580 ~ 18753784 (-)
G65102 NA non-coding upstream 109457 18759800 ~ 18760297 (-)
G65103 NA non-coding upstream 110028 18760371 ~ 18816516 (-)
G65108 NA non-coding upstream 131528 18781871 ~ 18836432 (-)
G64886 NA other downstream 707137 17928507 ~ 17931170 (-)
LOC103043390 NA other downstream 948995 17678814 ~ 17689312 (-)
LOC111192911 cyth3b,cyth3,LOC107556600,LOC106518738,LOC108239256,LOC107376516,LOC102303741,LOC108437157,LOC108258062 other downstream 973746 17535296 ~ 17664561 (-)
G64492 NA other downstream 1750404 16882335 ~ 16887903 (-)
G64387 NA other downstream 2052660 16585065 ~ 16585647 (-)
G65184 LOC108435872,LOC108274344,LOC107731677,LOC107558868 other upstream 247842 18898185 ~ 19023658 (-)
G65231 alyref,LOC107665635,LOC107748861,LOC107743018,LOC107654581 other upstream 629959 19280302 ~ 19284032 (-)
cdr2l cdr2l,LOC107665638,LOC107743016 other upstream 655644 19305987 ~ 19370708 (-)
ndufb2 ndufb2 other upstream 949871 19600214 ~ 19605725 (-)
llph llph other upstream 1144811 19795154 ~ 19799602 (-)

Expression


Co-expression Network