LOC103045528


Basic Information

Item Value
gene id LOC103045528
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 19223209 ~ 19278071 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU87943
AGCTTACGGCACCCAGCGCCGACCGGACCGGACCCACAAGACCCGCCGACCCGACCGGACCCCCAAACACCCGGACCTGCCGACGCGACCGGACCGGACCCACCGGACCCCCAAACACCTGGACTCACTGGCAGCATGCAGCTGCAGACTCCACACCTCACTCTGGTTCTGATCAGCCTGCTGACTCTCAATTGTGGCAGCTGGGCTCAGTCAGtctttaccatCCTGGTGTTGggccatcactagtgatgggtaATTGACAGCAAAATTAggggggaaataaaataaaaattagaaaaaaaaattaaatataaaatatgttattttctGCCTCTCTCACTTTAGTTTAGAAATCTCATCTGCTGCACTTTCCATTTAAATTAAATGGGAGTGAACTGGGACGAAGTTCCACCTGCAGCAGCTCCTCAGTATAAAAGCATCAACACGTTAACCAGACGACTTTAAAAACATCCAGAAGGGTTTTTCAGCTCTGTTGTTA
>TU87944
AGCTTACGGCACCCAGCGCCGACCGGACCGGACCCACAAGACCCGCCGACCCGACCGGACCCCCAAACACCCGGACCTGCCGACGCGACCGGACCGGACCCACCGGACCCCCAAACACCTGGACTCACTGGCAGCATGCAGCTGCAGACTCCACACCTCACTCTGGTTCTGATCAGCCTGCTGACTCTCAATTGTGGCAGCTGGGCTCAGTCAGGtaagatttatttctatttattgatCTGCTGTGATTAGTTGTGATTTCTCTTATATTATCTACTATCAACTTTTTTCTTCCAGTCCATAATAAAACCTGATGAATCTCcaaaaatatcttatttttgGACAAAATGTAGAACAggcactttttattattattatattaggatttcatgatgaatggaccaatagaatcaCTCCAAATGTacttgaaataaataattaaaagt
>XM_022671184.1
ATGTTCACAGGCAAACTGTTGGTTCACATGGTTGAACAGAGTCACTTCCTGCAGAAACAAAAGAAACGGTCAGAGCTGATCTGGAGCTTACGGCACCCAGCGCCGACCGGACCGGACCCACAAGACCCGCCGACCCGACCGGACCCCCAAACACCCGGACCTGCCGACGCGACCGGACCGGACCCACCGGACCCCCAAACACCTGGACTCACTGGCAGCATGCAGCTGCAGACTCCACACCTCACTCTGGTTCTGATCAGCCTGCTGACTCTCAATTGTGGCAGCTGGGCTCAGTCAGATGTTGGCTGGCCGGCGGAGAACACTGGGCTTGGAGGTGGAGAACGCTGGGTTGGGTGGTGTAGAACACTGGGCTGGGAGGTGGAGAACGCTGGGCTGGGAGGTGGAGAACGCTGGGTTGGGTGGTGGAGAACGCTGGGTTGGGTGGTGGAGAATGCTGGGTTGGTGGTGGAGAACGCTGGGCTGGGAGTGGAGAACACTGGGTTGGGTGGTGGAGAACGCTGGGCTGGGGGTGGAGAACGCTGGAACACTGGGCTGGGAGGTGGAGAACGCTGGGCTGGGTGGTGGAGAATGCTGGGTTGGGGGTGGAGAACGCTGGGCTGGGGGTGGAGAACACTGGGTTGGGTGGTGGAGAACGCTGGGCTGGGGGTGGAGAACACTGGGTTGGGTGGTGTAGAACACTGGGCTGGGAGGTGGAGAACACTGGGCTGGGAGGTGGAGAACGCTGGGCTGGGAGGTGGAGAACGCTGGGTTGGGTGGTGGAGAGCACTGGGCTGGGTGGTAGAGAACGCTGGGCTGGGAGGTGGAGAACGCTGGGTTGGGTGGTGTAGAACACTGGGCTGGGAGGTGGAGAACGCTGGGCTGGGGGGTGGAGAACGCTGGGCTGGTGGTGGAGAACGCTGGGCTGGGGTGGAGAACGCTGGGCTGGGTGGTGGAGAACGCTGGGCTGGGGGTGGAGAACGCTGGGCTGGGGGTGGAGAACGCTGGGCTGGGGGATGGAGAACGCTGGGCTGGGGGATGGAGAACTCTGGGCTGGGGGTGGAGAACGCTGGGCTGGGGGATGGAGAACGCTGGGCTGGTCGGTGGAGAATACTGGGCTGGGGTGGAGAACGCTGGGCTGGGGGATGGAGAACGCTGGGCTGGTGGTGGAGAATGCTGGGTTGGGTGGTGGAGAACGCTGGGCTGGGGGTGGAGAACACTGGTTGGGTGGTGGAGAAAGCTGGGCTGGGGGATGGAGAACGCTGGGCTGGGGGATGGAGAACGCTGGGCTGGGGTGGAGAACGCTGGCTGGGGGTGGAGAACACTGGGCTGGGGGTGGAGAACGCTGGGCTGGGGGTGGAGAACGCTGGGCTGGGGGGTGGAGAACGCTGGGCTGGGCGGTGGAGAACGCTGGGCTGGGGGATGGAGAACGCTGGGCTGGGGGTGGAGAACGCTGGGCTGGGTCTGCAGACGCCGCTGCTGAGGGTGGAGTCGAATGTTGTGAATGAAGGTGAAAAGGTTACAGCTACATGCAGCGTTCCAGAGGAGACCGGTCCCCTGCAGTTCTCCTTCTACAGGAACCAGCAGATGTTTATGATCCTCACCTCCAATGAAAACTCAACCAACACTTCTGGAATTCCAGGAATCCGGGGAATCGGACCTGCACTGCACCTACAGACACATGGAGTTTCCAGACTCATCCAACAGCAGCAACATCGAGAGAGTCTTAATCCAACCTGTTACTATCACCCCCTCATAAAAGTTCAACCTGGTTTGAAGGTGGTGGAGGGGGACCGGGTGAGGATCAGCTGTGATGTTTTGGGTCACAGTAAAAATGGGTATGAAGTTTTCCTAACGGACAGAGAGACGCTGCTGATGTCCAGCCCGTCATCCTTTACCCACAGCTTTGAGGTGAATGCCAGCAGCAGCGGGAGATATGTGTGTAAAGTGGAGACGGGCAAGACTGAGAAGATCTCCACCGCAGAGCTGTTTGTAGCAGAGCTGTTGTCGAGGCCTGTTCTGAGCATGAGTCCACAGCAGGTTTTCCAGGGCCAGATGTTAACTCTGAGCTGTAGGACTCTCAACATCAATCAAGAGAGGATCACTAAGGCAGACGTGAAGTTTGAATTATACAAAGACCAGCATCCTCTAAAAGAAGGCCACACCTTCAACTTCACAGCAAGCCAATCCAGCAACGGGAACTACACCTGTAGAGCTACAGCTAAGAACATCACCAAGGAAAGCAAACAGCTGATAATTAACGCCAAGGTGCCGGTCTCACCTCCAGTTATTCGAGCGGTCGGACAGGTGATAGTGGGGAAGCCATTCCAGCTCCTGTGTGAGAGTGAACTGGGAACTCTGCCCATCTCCTACACATTACTGCGGTACCAGAGACCCTTTTACACGCTGACCGTATCCGGACCTCAACGCAGCGCAGTGTTCAACATCTCCTACATCAACCATGCAGATGAAATCCACAGCTTCACCTGTCAGGCCCAGGGAGGAGCCTACAGCAGGTTCAGCCAAGCCCTCAACACACCTGTCATAGAACCTGTGTCCAAGCCGGAGCTGTCTCTGGGGTTTCCCAGGGGTCAGACGTTCACAGAGGGGACGGATGTGAGTCTGTACTGCAGTGTTCAGCAGGGCACGGTGCCGGTGACCTTCTTCTGGTACCGGGTCGGTTCCTCCAGACCCCTGTTCACCAGTCGCTCCTCCGTGACCCGCGGAGAACACGTCATCAGATCCATCACCCGAGATCACCGGGGAAAGTACTACTGCGGAGCCTACAACGACGCCGGCCAGACCCAGAACAGCGAACCGGTCACTGTCGGAGGTCAGAgtccaaatacttttaacaCTCCGGGAGTGATGGGCAGGAACGTGTGGAGTGATCACGTCTCCGACTCCGAATCCGATGATCCGGGTCGGGAGGAAGAGTGTGAGAAGTTGAGATACACAGAGATTCAGCCTCAGCAACCGAACAACCCTGAAGAAGTAGCTCTGGTggtggaggagtgtgtgataGTGAATAGTGAGCTGCAGGAATGGAACATACAGGGGTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU87943 False 499 lncRNA 0.49 3 19224014 19278071
TU87944 False 446 lncRNA 0.45 2 19224014 19224592
XM_022671184.1 True 3060 mRNA 0.58 14 19223209 19249152

Neighbor

gene id symbol gene type direction distance location
LOC111192912 NA coding upstream 44622 19177002 ~ 19178587 (+)
LOC111192965 LOC108435873 coding upstream 203941 18990517 ~ 19019268 (+)
LOC103035713 LOC108255900,LOC108435871,LOC105013149,LOC106606986,LOC107731682,LOC105910936,LOC103375364 coding upstream 516663 18687257 ~ 18706546 (+)
LOC107197347 NA coding upstream 540093 18669432 ~ 18683116 (+)
LOC111192972 NA coding upstream 553775 18657276 ~ 18669434 (+)
arhgdia arhgdia,LOC107654583,LOC107665665 coding downstream 8764 19286835 ~ 19305457 (+)
cd36 NA coding downstream 90443 19368514 ~ 19399220 (+)
LOC103040257 kdm7a coding downstream 291915 19569986 ~ 19598049 (+)
kmt2e kmt2e coding downstream 337539 19615610 ~ 19660520 (+)
orc5 orc5 coding downstream 437717 19715788 ~ 19728171 (+)
G65144 NA non-coding upstream 60291 19162569 ~ 19162918 (+)
G65122 NA non-coding upstream 190458 18945326 ~ 19032751 (+)
G65116 NA non-coding upstream 314523 18901452 ~ 18908686 (+)
G65044 NA non-coding upstream 382645 18792182 ~ 18840564 (+)
G65053 NA non-coding upstream 388355 18833959 ~ 18834854 (+)
G65178 NA non-coding downstream 315840 19593911 ~ 19594223 (+)
G65176 ndufb2,LOC107755897,LOC107694192 non-coding downstream 322817 19600888 ~ 19601638 (+)
G65182 NA non-coding downstream 331394 19609465 ~ 19610521 (+)
G65183 NA non-coding downstream 332841 19610912 ~ 19611872 (+)
G65301 NA non-coding downstream 452406 19730477 ~ 19730879 (+)
G64990 si:dkey-282h22.5,LOC108261121 other upstream 599710 18556128 ~ 18623499 (+)
G64698 rac1,RAC1,LOC105898786,LOC108437155,LOC106601744,LOC107664344 other upstream 1503297 17690209 ~ 17719912 (+)
LOC103030423 pcyt2,LOC108437168,LOC108277112,LOC107701914,LOC105013038,LOC107576708,LOC107729574,LOC106601930 other upstream 2335014 16833290 ~ 16888195 (+)
G64449 NA other upstream 2347268 16873087 ~ 16875941 (+)
G64431 NA other upstream 2469649 16753043 ~ 16753560 (+)
alyref alyref,LOC107743018,LOC107665635,LOC107748861 other downstream 2221 19280292 ~ 19340879 (+)
LOC103037311 LOC103037311,LOC103358095,LOC106514816,LOC107386321 other downstream 502592 19780663 ~ 19794325 (+)
G65565 NA other downstream 1679064 20957135 ~ 20957635 (+)
G65575 nav3 other downstream 1746104 21024175 ~ 21024574 (+)
agbl5 NA other downstream 2162338 21440409 ~ 21549162 (+)

Expression


Co-expression Network