alyref (alyref,LOC107743018,LOC107665635,LOC107748861)


Basic Information

Item Value
gene id alyref
gene name alyref,LOC107743018,LOC107665635,LOC107748861
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 19280292 ~ 19340879 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU87956
GTTTCCGGTCGGCGGGGCGCGCGGGTGATAGATCCGGGTATCAGCGTGTATAGAGTTTATACTGCGGTGTATACAGGAGTATAGCTGAGTATTAGTGTAGTATATAGCGGAGTATAAGAGAAGTATAGCGCAGGGTCAGCATGGCGGATAAGATGGACATGTCTCTGGATGACATTATTAAGCAGAATAAGCAGCAGCGCGGCGGTGGTGGAGGCGGAGGCCGCGGGGggagaggcggccggggccgggGAGTGGGAGCCGGCGGGGGCCGCGGCGGCAGCGTGGGGAGACTCGGTGCCGGAGGATTCGGAGGCCGGGGCGGAGGAGCGGTGGGGCCCATGCGGAGCCGGCAGAGCCTGGGCCGCGGCAGAGGCGGCAGACCCGCGCCGTACAGCAGGGTAGGAGAATCCGCAGCAGCGGCCGCAGGGCCCGGGCCTAGCTCAGCCCGAACCCGGGCCTCTCCGGAAAAATGTTCCTATAAAATGTGTTGTGCATTATTGTTCTCTCTTCCCCCCCAAAACCAAAACCTCGGTTCTCCCGCGGGGTTTAGCTGAGCGGATCCAGCGTGGCTGAAGCGCCCTAACTAGGGCACACAGGCCGGCGCCATTTTGGAACAGCAGCAGCGGGGCGCACTGAAATGGAGAAATAGTGAAGAAATGAtggagaaaaaagggagaagCGGAGGATCTGCTGCTTTATTCTCCTCCAGAGTTCTGCTCTCAGCGTCCAGGCGGTTCTGGAGACCCGGAGATCAGCGGGGAGACCGGcggtgttttgtgttttttgcggGAGCTGAAGAGTGCGGATCTTTTGTTCGGAGTCTGATGAAGAGAAACGGCTTTAATTTCAGCCTGAATATCAGATTCTCCGCGGATTCTCCTTATGAAGAATGGACTCTTTAATCTCTAAATCTGTGTTAATCTCTGCTGCAGGTTTAGAGTttatagattatataaacaCTTATATAAAGTTAGCTCAGTCAAAATGGCGTGCTCTCAAAATGGACGCTGATCTCTTCAGTTCCTCAGGAGCTTTAATCAGGCAGCACTGGACTCTATTCATCTCTAtttttatctccatttttaattttttgatggACTGGCTGAATCCACCACCTGTTTCTTCTGGAGATCTGAACTCTGAAGACCTGCAGAGATTTATTTAAAGACTCTGGGCCGAAGCAGCTCCCCGACAAGTGGCAGCATGACCTGTTCGATAACGGCTACAGTGCCGGTGCTGGAGGTGGCGGTGGTGGCGGCGGCGGAGCTGGAGTGGAGACTGGAGGAAAACTGCTGGTGTCCAATCTGGACTTCGGCGTCTCGGACGCAGATATTCAGGAACTCTTCGCTGAATTCGGCACTCTGAAGAAAGCTGCGGTGCATTATGACCGGTCGGGGCGGAGCCTCGGCACCGCAGACGTTCACTTCGAGAGAAAATCAGACGCTCTGAAGGCTATGAAGCAGTACAATGGGGTTCCACTGGATGgtCGTCCAATGAACATTCAGCTGGTGACATCACAGATTGACGCTCAGAGGCGAGCCCCGATGCAGGGTTTGAATcgaggtggtggaggaggaggaatgaaCAGGAACAGAACCGGGGGTTTCGGGGGTTTACAGCGAGGCCGTGGAGGTCGGGGTGGAGGACTCCGAGGCCGCGGTAGAGGAGGAGGTGGAAGAGGCAATAACAAACAGCAGCTCTCGGCAGAAGAACTGGACGCTCAGCTAGATGCCTACAATGCCAGGATGGATACCAGCTAAACCACGCTGACCTGCCGAGCCGTGTTCATGTCTCCTGGTGTGAGATGGTGGTTGTTACAGCTTTGAATATGGTGGACATTTTACACTTAACCGTCTTCAGAAGTGATTTAAACTTGTGTACCAATATTTTCTCCTTTTAAATCTCGTGTTTTTTaccaattttttgtttttagtttttttttcttcttttttgagaGAACTTGGTCTGACTGTAGGAGTTGATGGGGGTGCTTGTCTTTACCCTCACTTTGTAGATCGTTGTAATAAAGCCTGCAGTACATCCACAGATTCTAAGCAATGCCTCTTTCCTTTTGTACAGAACATGCAGTTTTAATGTCTGTGTACAGAAGTTGCGCAGGTTTGTAAAATCATTAAGACTACTTTGTATACCAAATGTACTGCCTAATTGTGATGAGCAGGCTtgcgtttttattttattgcataacCTGTACTGTTAATTCATGGCCACAGTTTTGTAGTTTAGAGGAATGTTCTAACTTTTCTGTTCTACTTCCTGTATCTCAATCtactttatttttgtacataaaTGCAATTTTCAAgtaaaaaaaaaaaaaaaaaaca
>XM_007241718.3
AGGGAGCAGTTTCCGGTCGGCGGGGCGCGCGGGTGATAGATCCGGGTATCAGCGTGTATAGAGTTTATACTGCGGTGTATACAGGAGTATAGCTGAGTATTAGTGTAGTATATAGCGGAGTATAAGAGAAGTATAGCGCAGGGTCAGCATGGCGGATAAGATGGACATGTCTCTGGATGACATTATTAAGCAGAATAAGCAGCAGCGCGGCGGTGGTGGAGGCGGAGGCCGCGGGGggagaggcggccggggccgggGAGTGGGAGCCGGCGGGGGCCGCGGCGGCAGCGTGGGGAGACTCGGTGCCGGAGGATTCGGAGGCCGGGGCGGAGGAGCGGTGGGGCCCATGCGGAGCCGGCAGAGCCTGGGCCGCGGCAGAGGCGGCAGACCCGCGCCGTACAGCAGGCCGAAGCAGCTCCCCGACAAGTGGCAGCATGACCTGTTCGATAACGGCTACAGTGCCGGTGCTGGAGGTGGCGGTGGTGGCGGCGGCGGAGCTGGAGTGGAGACTGGAGGAAAACTGCTGGTGTCCAATCTGGACTTCGGCGTCTCGGACGCAGATATTCAGGAACTCTTCGCTGAATTCGGCACTCTGAAGAAAGCTGCGGTGCATTATGACCGGTCGGGGCGGAGCCTCGGCACCGCAGACGTTCACTTCGAGAGAAAATCAGACGCTCTGAAGGCTATGAAGCAGTACAATGGGGTTCCACTGGATGgtCGTCCAATGAACATTCAGCTGGTGACATCACAGATTGACGCTCAGAGGCGAGCCCCGATGCAGGGTTTGAATcgaggtggtggaggaggaggaatgaaCAGGAACAGAACCGGGGGTTTCGGGGGTTTACAGCGAGGCCGTGGAGGTCGGGGTGGAGGACTCCGAGGCCGCGGTAGAGGAGGAGGTGGAAGAGGCAATAACAAACAGCAGCTCTCGGCAGAAGAACTGGACGCTCAGCTAGATGCCTACAATGCCAGGATGGATACCAGCTAAACCACGCTGACCTGCCGAGCCGTGTTCATGTCTCCTGGTGTGAGATGGTGGTTGTTACAGCTTTGAATATGGTGGACATTTTACACTTAACCGTCTTCAGAAGTGATTTAAACTTGTGTACCAATATTTTCTCCTTTTAAATCTCGTGTTTTTTaccaattttttgtttttagtttttttttcttcttttttgagaGAACTTGGTCTGACTGTAGGAGTTGATGGGGGTGCTTGTCTTTACCCTCACTTTGTAGATCGTTGTAATAAAGCCTGCAGTACATCCACAGATTCTAAGCAATGCCTCTTTCCTTTTGTACAGAACATGCAGTTTTAATGTCTGTGTACAGAAGTTGCGCAGGTTTGTAAAATCATTAAGACTACTTTGTATACCAAATGTACTGCCTAATTGTGATGAGCAGGCTtgcgtttttattttattgcataacCTGTACTGTTAATTCATGGCCACAGTTTTGTAGTTTAGAGGAATGTTCTAACTTTTCTGTTCTACTTCCTGTATCTCAATCtactttatttttgtacataaaTGCAATTTTCAAGTC

Function

symbol description
alyref Predicted to enable mRNA binding activity. Predicted to be involved in mRNA export from nucleus. Predicted to be active in nucleus. Orthologous to human ALYREF (Aly/REF export factor).

NR:

description
THO complex subunit 4 isoform X1

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU87956 True 2342 TUCP 0.50 7 19280300 19340879
XM_007241718.3 False 1554 mRNA 0.52 6 19280292 19284033

Neighbor

gene id symbol gene type direction distance location
LOC103043906 LOC108435857,LOC107654574,LOC107748880,LOC107558871,LOC108279187,LOC107087444 coding upstream 8445 19268422 ~ 19271847 (+)
LOC111192912 NA coding upstream 101705 19177002 ~ 19178587 (+)
LOC111192965 LOC108435873 coding upstream 261024 18990517 ~ 19019268 (+)
LOC103035713 LOC108255900,LOC108435871,LOC105013149,LOC106606986,LOC107731682,LOC105910936,LOC103375364 coding upstream 573746 18687257 ~ 18706546 (+)
LOC107197347 NA coding upstream 597176 18669432 ~ 18683116 (+)
cd36 NA coding downstream 27635 19368514 ~ 19399220 (+)
LOC103040257 kdm7a coding downstream 229107 19569986 ~ 19598049 (+)
kmt2e kmt2e coding downstream 274731 19615610 ~ 19660520 (+)
orc5 orc5 coding downstream 374909 19715788 ~ 19728171 (+)
golgb1 NA coding downstream 408431 19749310 ~ 19779463 (+)
G65150 NA non-coding upstream 22709 19253483 ~ 19257583 (+)
LOC111192982 NA non-coding upstream 27843 19250226 ~ 19252449 (+)
G65145 NA non-coding upstream 27877 19247531 ~ 19252415 (+)
G65144 NA non-coding upstream 117374 19162569 ~ 19162918 (+)
G65122 NA non-coding upstream 247541 18945326 ~ 19032751 (+)
G65178 NA non-coding downstream 253032 19593911 ~ 19594223 (+)
G65176 ndufb2,LOC107755897,LOC107694192 non-coding downstream 260009 19600888 ~ 19601638 (+)
G65182 NA non-coding downstream 268586 19609465 ~ 19610521 (+)
G65183 NA non-coding downstream 270033 19610912 ~ 19611872 (+)
G65301 NA non-coding downstream 389598 19730477 ~ 19730879 (+)
LOC103044219 mcrip1,fam195b,LOC107654575 other upstream 775 19276802 ~ 19279517 (+)
LOC103045528 NA other upstream 2221 19223209 ~ 19278071 (+)
G64990 si:dkey-282h22.5,LOC108261121 other upstream 656793 18556128 ~ 18623499 (+)
G64698 rac1,RAC1,LOC105898786,LOC108437155,LOC106601744,LOC107664344 other upstream 1560380 17690209 ~ 17719912 (+)
LOC103030423 pcyt2,LOC108437168,LOC108277112,LOC107701914,LOC105013038,LOC107576708,LOC107729574,LOC106601930 other upstream 2392097 16833290 ~ 16888195 (+)
LOC103037311 LOC103037311,LOC103358095,LOC106514816,LOC107386321 other downstream 439784 19780663 ~ 19794325 (+)
G65565 NA other downstream 1616256 20957135 ~ 20957635 (+)
G65575 nav3 other downstream 1683296 21024175 ~ 21024574 (+)
agbl5 NA other downstream 2099530 21440409 ~ 21549162 (+)
gen1 gen1 other downstream 2288908 21629787 ~ 21715437 (+)

Expression


Co-expression Network