G65182


Basic Information

Item Value
gene id G65182
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 19609465 ~ 19610521 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU87999
TGCCTTTATTTATTCAGTCATTACCATCGTCTTCCTCATAGCCATCAGAATTACAAATAACATCTACAGATATTAATGTATATTcgagtttacttttttttatttattaaatttggtCATTTGTAACATGTTAAAATGAATTAGACcgtaattaaaaatgtatcatttaagtTTGAGACAAAAAAGACTATCCTACTCGTGAGAAATAAATCGAATTTAAGCACAACAAACACAAATGTTTCCATGGCTGGAAGCAGCACAGCTGCACATTTTGGTAATTTGGCAACACACCATGCTAAAACGCTAACCTAAACAAACGTTTCATTATGTCGGGTTACGCGTTAAAATCCACCAATAACGAACCAAAAGATACGAAAAACAAGTCATGTAATCCCGTTTTCTATCTTTAATACGACTTAATAGCCGCACACAATCCTTTAACGTCGTTTCCGCTGTAATGACAAAAACAGTACTCTGCCAAAATCTGTCGCCATGCCAGAGTCTCGCGAGATCTTGTGAGAAACCGAGGGTGTCGACTGCACGTTTATTTACTAAAATTACTCAGAACATTCTTCacattttcctattttttttattgtagccTATCTGTTGACTATTTTACTTTAGAAGTTGTtattaaattactgttttacatCAATTTGAgggtaaagaaaaataaagatagtaagCGAAATGAAAGGCCAAGTAAAATTATCTATCGACTTCTTTTACGTGTCATGTCACATAAATGCTTATTTATTTGacattaaaaagttaaacaagATAAATCGGGATTTATCAGGGGATaaatcagtgagtgagtgacctTAAACACAAAAGGCCTGTGTGTCTGCAGGTTTTTATTTAGTGACCCACAAGCATACTTATTTACAGTTGTTAAGTACTCAGTTAGCCTCATtcctaaaacttaaaaaataatatgaagTGTATATCTGTTGAGTTGAAATTAACATCTATGGatctgtaaaaaaatcatatcccCATGTTTGGTTTATAAAATTATCAGAATATTTCCAgaattattaatgtaaaaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU87999 True 1057 lncRNA 0.32 1 19609465 19610521

Neighbor

gene id symbol gene type direction distance location
LOC103040257 kdm7a coding upstream 11416 19569986 ~ 19598049 (+)
cd36 NA coding upstream 210245 19368514 ~ 19399220 (+)
arhgdia arhgdia,LOC107654583,LOC107665665 coding upstream 304008 19286835 ~ 19305457 (+)
LOC103043906 LOC108435857,LOC107654574,LOC107748880,LOC107558871,LOC108279187,LOC107087444 coding upstream 337618 19268422 ~ 19271847 (+)
LOC111192912 NA coding upstream 430878 19177002 ~ 19178587 (+)
kmt2e kmt2e coding downstream 5089 19615610 ~ 19660520 (+)
orc5 orc5 coding downstream 105267 19715788 ~ 19728171 (+)
golgb1 NA coding downstream 138789 19749310 ~ 19779463 (+)
ppfia2 ppfia2 coding downstream 228674 19839195 ~ 20054048 (+)
lin7a lin7a coding downstream 544534 20155055 ~ 20173304 (+)
G65176 ndufb2,LOC107755897,LOC107694192 non-coding upstream 7827 19600888 ~ 19601638 (+)
G65178 NA non-coding upstream 15242 19593911 ~ 19594223 (+)
G65150 NA non-coding upstream 351882 19253483 ~ 19257583 (+)
LOC111192982 NA non-coding upstream 357016 19250226 ~ 19252449 (+)
G65145 NA non-coding upstream 357050 19247531 ~ 19252415 (+)
G65183 NA non-coding downstream 391 19610912 ~ 19611872 (+)
G65301 NA non-coding downstream 119956 19730477 ~ 19730879 (+)
G65306 NA non-coding downstream 133363 19743884 ~ 19747191 (+)
G65310 NA non-coding downstream 192654 19803175 ~ 19805102 (+)
G65311 NA non-coding downstream 194105 19804626 ~ 19806600 (+)
alyref alyref,LOC107743018,LOC107665635,LOC107748861 other upstream 268586 19280292 ~ 19340879 (+)
LOC103044219 mcrip1,fam195b,LOC107654575 other upstream 329948 19276802 ~ 19279517 (+)
LOC103045528 NA other upstream 331394 19223209 ~ 19278071 (+)
G64990 si:dkey-282h22.5,LOC108261121 other upstream 985966 18556128 ~ 18623499 (+)
G64698 rac1,RAC1,LOC105898786,LOC108437155,LOC106601744,LOC107664344 other upstream 1889553 17690209 ~ 17719912 (+)
LOC103037311 LOC103037311,LOC103358095,LOC106514816,LOC107386321 other downstream 170142 19780663 ~ 19794325 (+)
G65565 NA other downstream 1346614 20957135 ~ 20957635 (+)
G65575 nav3 other downstream 1413654 21024175 ~ 21024574 (+)
agbl5 NA other downstream 1829888 21440409 ~ 21549162 (+)
gen1 gen1 other downstream 2019266 21629787 ~ 21715437 (+)

Expression


Co-expression Network