cdr2l (cdr2l,LOC107665638,LOC107743016)


Basic Information

Item Value
gene id cdr2l
gene name cdr2l,LOC107665638,LOC107743016
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 19305987 ~ 19370708 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU88058
CAGTCATTTTACCTGTATGACGTAGTGTAAAATGATATGAATGTTTATCTGGTTAAATTTAGCTATGATGTCACTCCAACTCCAGCATTTGAATTCTGATGTAAACAGAACccaacatttaataataactataaaaatTCAGAAAAGCtcattaaaagttaattttactgcAGTGCACAGTGGCTATAGCTAGATTAGCATACTGTTGCTGCATCTCAGATCAGGAAGCGAGTTATCAGAGTTCAGGTCTTTGGTTGTTCATGTTGGTTTGAGTTGTGTTTCCAGTTCATTGTTACTCTTACTGGAAATTAACTGGGCGAGTTCTGAAAAGATACAGCAGTTCTCTGCTGAAAATTTCCTCTCTTTTCACACTGTATCTGAATCTGCACGACTGTGTTTAACTACGCCTCACTTCTGTACTCGGATCTTTCCAATATTAAAGACGCTTTGCTTATAAa
>XM_022671457.1
aggggttgAGGCCGGGTGGTGGAGGTGGATGTAGCGGGATCTGATcgctgtatatttttatattaaggtTATAATTTGGAGCTGTTCTGAccggaagctctgcatctctgtAGCCGCGCTGTGCAGCGGGCAGGCCGGCCGCCACAGCAGCTCAAATACACAGTTTTGGGTCTTTTGTTGTCGTGATTTTTCACCCCCGGCGTCGTTAAGGGGTTCCAGAAGATTGTTCtgctattttgtattttttgcctGTTTATTACCGGACGCGCGCGCTGAGGATGATCAGCCTCCGTATCTTAATCCGCTCGAGCTTTCCCGGCTAAAATATTCTCTCAGGCTTTTTCTGACGTGGTTTTAATAACCCCAGCATCGACAAGGGTTTCCAGAACACCGAGACTGAACCCTTTTAACCCTTTATCCTCGAGTTTTATCCCGGCCTGAGTTTCTGGGGAGCCGGATGCTCCGGACCAGCAGGATGGAGGAGTTTGTGACCGAGGAGGAAGAGCCCTGGTACGACCAGAGAGACCTGGAGCAGGATCTGCACTTGGCGGCGGAGTTGGGGAAAACGCTGCTGGAGAGAAACAAGGAGCTGGAAGATTCTCTGCAGCAGATGTACATCAACAACGAGGAGCAGGTGCAGGAGATCGAGTATTTGTCGAAGCAGCTGGAGATGCTGCGTGAGATGAACGAGCAGCACGCGAAAGTGTACGAGCAGCTGGACGTGACGGCGCGAGAGCTGGAGATCACCAACGAGAAACTGGTGCTGGAGAGCAAAACCTCGCAGCAGAAAATCGACAGgtTAACCGGTACGATGGAAATGCTGCAGGGTCAGGTGGACATGCTGACGGCTCGAGTGGAGGAGCTGCGGACTCTGGAGGAGCTTCGGGTTCGgcgagagaagaaagagaggaggaagaCGGTTCATTCGTTCCCCTGCCTGAAAGAGCTCTGCACCGCCCCCAGGTACGAGGATGGCTTCGTTGTGTCGGACCCAGGCAGCGATGACCTGCAGGTGCAGAACTCTGCAGACGAGGAAAACGAGCGTCTGCGCGGCGCGGTCGCGTCTCTCCGGGCGACCGTCGCGGCCGAGCGGAGTCGCCGGGAAAACGCAGAACGCGAGTGTGCCGCTGTGCTGCAGGAGTTCGAGCGGCTGGAGCAGAGGCTGCTGGGAGCCGAGGGCTGCCAGCGACGGGTACACGAGCTCGAGGCCGAGCTGCAAGAGATGCAACAGCTGCGCAGGTCGCGCGCCCGACTCCTCACCGGCGAGGACGGCCTGGAGCAGACGCTGCTCAGCAGCGCTCCGGAGACCGACACGCCAGAGGACGCAACCGCTGCGGCACAAGAGGACGGAGGGTCTGGGGAGACGCCGGTGCGTAAAAGCTGTAGTGACACAGCTCTGGACGTCATCTCCGCCGTGGACGCCTCGGGCAGACGCAAGGGCAGTTACGCGCTGCACGCCAACGGCGTTCGCAAGCGCGGAATGTCCATTCTGCGTGAGGTGGACGAACAGTACCACGCGCTGCTGGAAAAGTATGAGGAGCTGCTGGGTAAGTGCAGGCGCCACGAAGAAAGCCTGCGGCACGCCGAGGTGCAGACATCCCGACCCGTATCCAGAGACCCGTCTATGAAGGAGTGCCGAGCCGCCGAGTCCCGGGAGCCGCCGCAGACGCCACCCTCCACGCCTGAGGCCATGGAGGGCATCAGCAGACAGGTGGAGGCTGTGGACAAGCGGCTGAGCCAGAACACCCCTGAGTACAAAGCCCTGTTCAAGGAGATCTTCTCCCGCCTGCAGAAGACCAAGACCGATATCAACTCCACCAAAGGGAGAAAGAGTGGAAAATAACCGAATAACTGCGGATTTTGCGAAACATAACGCGCCACAAGTTTTACTTTCTAACCCAGGGGTTCTTTACTCCATGGGCACCCACTGTCCTCTATACCTTTCCCTGCTCCAACTGCTGATGAGGAAGATCAGCTGATTAGGAGGATCAGCTGGGTGGGGAAAACTGTATATTGTTTCAGTCAGTGGGTCCTCATAAGTACACAGGATGGGGGACTTCCTTCTAACCAACGGTGACTCAGATTCAAAAGTCAATGTTAAAATTCAGATGTACGAATTATACTAATAAATGATCTGAAACAGTTAATGAAATGATTTTCATTCATTTGGTTTCAGACCAAAAAGTGTTATTTCTACTAAAGCTTTAAAATTGTGTAGCAGAAACTCTTTTACAGCACAGGAAGCGGCTAAACGGATACATAACTACTTTCCGCATAGCGAGTAGATTTGCATATTACGCTGCACACAGATTTTAGtcctgttttaaaacaaaagtggCTAAAAATCTTATCAGGATAAAATTCAGAACCTAATCACATTGGTGTGATTAAAAAGTGGTTAAACAGGTATAAACAGAGTCTTCTGCTGTGTTCTGTTTTAACTCCATCAGGGCGGATTTATAACTCAGAGCCCCACAATCCCAAATTTTGAATCCAACATGGCCACCCTGCATCTCAACAGTAATAAAgcagtattaatattattacacaGTTTATTATCATTACTGTATAATTATTATCTATCCACTATTAAATCAGTCcaacacacagtactgtactactCAAGTCTGTGATTATATGGGGTTTAAtatctgctaaaaaaaatgctttagcTAAAAACGCTATTTTGGGACAATGATAATCTGGGACATAAAAGTGGAAATGTGTTGGTTAGATTCACCATAAGACACTGGAAAGGAATTAAAACACCTGTATGACGTAGTGTAAAATGATATGAATGTTTATCTGGTTAAATTTAGCTATGATGTCACTCCAACTCCAGCATTTGAATTCTGATGTAAACAGAACccaacatttaataataactataaaaatTCAGAAAAGCtcattaaaagttaattttactgcAGTGCACAGTGGCTATAGCTAGATTAGCATACTGTTGCTGCATCTCAGATCAGGAAGCGAGTTATCAGAGTTCAGGTCTTTGGTTGTTCATGTTGGTTTGAGTTGTGTTTCCAGTTCATTGTTACTCTTACTGGAAATTAACTGGGCGAGTTCTGAAAAGATACAGCAGTTCTCTGCTGAAAATTTCCTCTCTTTTCACACTGTATCTGAATCTGCACGACTGTGTTTAACTACGCCTCACTTCTGTACTCGGATCTTTCCAATATTAAAGACGCTTTGCTTATAAa

Function

symbol description
cdr2l Is expressed in several structures, including nervous system; neural plate; otic vesicle; presumptive diencephalon; and presumptive telencephalon. Orthologous to human CDR2L (cerebellar degeneration related protein 2 like).

NR:

description
PREDICTED: cerebellar degeneration-related protein 2-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU88058 False 458 lncRNA 0.36 2 19305987 19370708
XM_022671457.1 True 3215 mRNA 0.49 5 19305987 19319417

Neighbor

gene id symbol gene type direction distance location
LOC103035518 nptx1l,LOC108435874 coding downstream 184527 19111133 ~ 19121460 (-)
LOC103035404 zgc:153845,LOC103035404,LOC108435855,LOC104925609,LOC106601411 coding downstream 587357 18717502 ~ 18718630 (-)
tspan10 NA coding downstream 715917 18586569 ~ 18590070 (-)
LOC103028209 NA coding downstream 730818 18567677 ~ 18575169 (-)
LOC103028836 NA coding downstream 755014 18538903 ~ 18550973 (-)
sema3c sema3c,LOC107680038,LOC107694195,LOC106576426 coding upstream 38590 19409298 ~ 19515383 (-)
lhfpl3 lhfpl3 coding upstream 294851 19665559 ~ 19714443 (-)
guca1a guca1a,LOC107590762,LOC107755893 coding upstream 362047 19732755 ~ 19738419 (-)
acss3 acss3,LOC107755903,LOC107749070 coding upstream 683243 20053951 ~ 20064790 (-)
myf5 myf5,LOC107734855 coding upstream 812386 20183094 ~ 20189701 (-)
G65232 NA non-coding downstream 576 19302894 ~ 19305411 (-)
G65236 NA non-coding downstream 55825 19249186 ~ 19250162 (-)
G65222 NA non-coding downstream 57300 19139597 ~ 19248687 (-)
G65213 NA non-coding downstream 161877 19058448 ~ 19144110 (-)
G65185 NA non-coding downstream 397293 18901627 ~ 18908694 (-)
G65251 NA non-coding upstream 8006 19378714 ~ 19384419 (-)
G65256 NA non-coding upstream 31636 19402344 ~ 19426200 (-)
G65267 NA non-coding upstream 140092 19510800 ~ 19574509 (-)
G65271 kdm7a,LOC106573199 non-coding upstream 209419 19580127 ~ 19588458 (-)
G65273 NA non-coding upstream 221586 19592294 ~ 19593113 (-)
G65231 alyref,LOC107665635,LOC107748861,LOC107743018,LOC107654581 other downstream 21955 19280302 ~ 19284032 (-)
G65184 LOC108435872,LOC108274344,LOC107731677,LOC107558868 other downstream 282329 18898185 ~ 19023658 (-)
LOC111192976 NA other downstream 593467 18624875 ~ 18712520 (-)
LOC111192971 LOC108435850 other downstream 655644 18638307 ~ 18650343 (-)
G64886 NA other downstream 1374817 17928507 ~ 17931170 (-)
ndufb2 ndufb2 other upstream 229506 19600214 ~ 19605725 (-)
llph llph other upstream 424446 19795154 ~ 19799602 (-)
ost4 NA other upstream 2174710 21545418 ~ 21574199 (-)
G65803 gen1 other upstream 2259250 21629958 ~ 21684828 (-)
G66081 bcap29 other upstream 2919977 22290685 ~ 22291682 (-)

Expression


Co-expression Network