G65271 (kdm7a,LOC106573199)


Basic Information

Item Value
gene id G65271
gene name kdm7a,LOC106573199
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 19580127 ~ 19588458 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU88118
GTCTCTAGCAGGTTCTTGGCCACGTACCAGGAGATGGCCTCGAAATAAGGAAATTTAAAAAGGTCTGGAGTCTTCAGCCTCCGCTCCATCtcataacacCTGAGCTGCATGCCTATGTTCAGGTTGTGTAAGAAGTTCCCACCGAAAGCCATGCAGTCCTGAGAGGTGAGCACAGCATGGATCCAGCCTGTAGGCAGAAGTACAGTGGTCCCCTGTTTCACCACACACTTATAGCACTTCTCCACCTTCTCCCCGAAGAACACTTCGCTCTGATTGGGCGACGAGCTCCAAGACTCATATAGTGCAAGGTTAGCCTTAGTTGGCTCGATCAAGTAGAAAATCTTCTCCCCCCAGAGAACGTGGTACCACACTGAAGTTCCTCCGAAGTCGATGTGGAAGTCTGTGTAACTGTTCTTTACCCCCATCAGGCAGTACTTCTGCACAAATGGTTTAGGGAAGAAAGAGTCATCCGGCCAGTAATTCTCCACCCAGGACATTTTACGAGCGATATCTGGAACCTCCACCAGCTCTGCCATCTTAGTATCTGAGAACTCCAGGCTGATGAGGTTCAGCACCTTGGGCCGCTCTGGCTGATAATAATACTTCACAAACTCACTCAGCTTCATCTTACTGTCTGCCTGTCTGGCTACGTCAATCACATCGATGACTTTATTCCCacCCACATACTGCTCCACGTCTGTGACAGAGAAGGACAGCGGGGGCAGTTTGAGCCCCAGTCCTTCCATG

Function

symbol description
kdm7a Enables histone demethylase activity; methylated histone binding activity; and transition metal ion binding activity. Involved in histone lysine demethylation. Located in nucleolus and nucleoplasm. Implicated in melanoma.

NR:

description
PREDICTED: lysine-specific demethylase 7A

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU88118 True 747 lncRNA 0.50 6 19580127 19588458

Neighbor

gene id symbol gene type direction distance location
sema3c sema3c,LOC107680038,LOC107694195,LOC106576426 coding downstream 64744 19409298 ~ 19515383 (-)
LOC103035518 nptx1l,LOC108435874 coding downstream 458667 19111133 ~ 19121460 (-)
LOC103035404 zgc:153845,LOC103035404,LOC108435855,LOC104925609,LOC106601411 coding downstream 861497 18717502 ~ 18718630 (-)
tspan10 NA coding downstream 990057 18586569 ~ 18590070 (-)
LOC103028209 NA coding downstream 1004958 18567677 ~ 18575169 (-)
lhfpl3 lhfpl3 coding upstream 77101 19665559 ~ 19714443 (-)
guca1a guca1a,LOC107590762,LOC107755893 coding upstream 144297 19732755 ~ 19738419 (-)
acss3 acss3,LOC107755903,LOC107749070 coding upstream 465493 20053951 ~ 20064790 (-)
myf5 myf5,LOC107734855 coding upstream 594636 20183094 ~ 20189701 (-)
myf6 myf6 coding upstream 613640 20202098 ~ 20205655 (-)
G65267 NA non-coding downstream 5618 19510800 ~ 19574509 (-)
G65256 NA non-coding downstream 153927 19402344 ~ 19426200 (-)
G65251 NA non-coding downstream 195708 19378714 ~ 19384419 (-)
G65232 NA non-coding downstream 274716 19302894 ~ 19305411 (-)
G65236 NA non-coding downstream 329965 19249186 ~ 19250162 (-)
G65273 NA non-coding upstream 3836 19592294 ~ 19593113 (-)
G65279 NA non-coding upstream 17832 19606290 ~ 19606501 (-)
G65276 NA non-coding upstream 20996 19609454 ~ 19610489 (-)
G65277 NA non-coding upstream 22477 19610935 ~ 19611878 (-)
G65339 NA non-coding upstream 81089 19669547 ~ 19672117 (-)
cdr2l cdr2l,LOC107665638,LOC107743016 other downstream 209419 19305987 ~ 19370708 (-)
G65231 alyref,LOC107665635,LOC107748861,LOC107743018,LOC107654581 other downstream 296095 19280302 ~ 19284032 (-)
G65184 LOC108435872,LOC108274344,LOC107731677,LOC107558868 other downstream 556469 18898185 ~ 19023658 (-)
LOC111192976 NA other downstream 867607 18624875 ~ 18712520 (-)
ndufb2 ndufb2 other upstream 11756 19600214 ~ 19605725 (-)
llph llph other upstream 206696 19795154 ~ 19799602 (-)
ost4 NA other upstream 1956960 21545418 ~ 21574199 (-)
G65803 gen1 other upstream 2041500 21629958 ~ 21684828 (-)
G66081 bcap29 other upstream 2702227 22290685 ~ 22291682 (-)

Expression


Co-expression Network