G65301


Basic Information

Item Value
gene id G65301
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 19730477 ~ 19730879 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU88156
aaacaataaaaaataaggaattgtcttcctttcagtgcaattcaaatgcaagtttttcttaaataaacagagtgtaaaaaaatatcactcaacactaatctcctgaggtagaggcgtgtcgactcgaggagagcgctgagtgggcggggccaggctgagcctacctgcatggcggtttggctggctttgctgagccatgtgacgcatgtgcaacaacaagagaccagagagtagactgtggtgaatcctcgtgcgcagcagtcagtgcgtgcggcagagaaaaaagcttaataccaataccagcgttggtatcgatattatcgatatttggatcgatccgcccacctctaccAGATAGCATGAAGGCTCTGC

Function

GO:

id name namespace
GO:0008237 metallopeptidase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU88156 True 372 lncRNA 0.47 2 19730477 19730879

Neighbor

gene id symbol gene type direction distance location
orc5 orc5 coding upstream 2306 19715788 ~ 19728171 (+)
kmt2e kmt2e coding upstream 69957 19615610 ~ 19660520 (+)
LOC103040257 kdm7a coding upstream 132428 19569986 ~ 19598049 (+)
cd36 NA coding upstream 331257 19368514 ~ 19399220 (+)
arhgdia arhgdia,LOC107654583,LOC107665665 coding upstream 425020 19286835 ~ 19305457 (+)
golgb1 NA coding downstream 18431 19749310 ~ 19779463 (+)
ppfia2 ppfia2 coding downstream 108316 19839195 ~ 20054048 (+)
lin7a lin7a coding downstream 424176 20155055 ~ 20173304 (+)
rps16 rps16,LOC103382554 coding downstream 531701 20262580 ~ 20266197 (+)
ppp1r12a ppp1r12a coding downstream 568823 20299702 ~ 20397967 (+)
G65183 NA non-coding upstream 118605 19610912 ~ 19611872 (+)
G65182 NA non-coding upstream 119956 19609465 ~ 19610521 (+)
G65176 ndufb2,LOC107755897,LOC107694192 non-coding upstream 128839 19600888 ~ 19601638 (+)
G65178 NA non-coding upstream 136254 19593911 ~ 19594223 (+)
G65150 NA non-coding upstream 472894 19253483 ~ 19257583 (+)
G65306 NA non-coding downstream 13005 19743884 ~ 19747191 (+)
G65310 NA non-coding downstream 72296 19803175 ~ 19805102 (+)
G65311 NA non-coding downstream 73747 19804626 ~ 19806600 (+)
G65404 NA non-coding downstream 420354 20151233 ~ 20151557 (+)
G65405 NA non-coding downstream 436268 20167147 ~ 20167452 (+)
alyref alyref,LOC107743018,LOC107665635,LOC107748861 other upstream 389598 19280292 ~ 19340879 (+)
LOC103044219 mcrip1,fam195b,LOC107654575 other upstream 450960 19276802 ~ 19279517 (+)
LOC103045528 NA other upstream 452406 19223209 ~ 19278071 (+)
G64990 si:dkey-282h22.5,LOC108261121 other upstream 1106978 18556128 ~ 18623499 (+)
G64698 rac1,RAC1,LOC105898786,LOC108437155,LOC106601744,LOC107664344 other upstream 2010565 17690209 ~ 17719912 (+)
LOC103037311 LOC103037311,LOC103358095,LOC106514816,LOC107386321 other downstream 49784 19780663 ~ 19794325 (+)
G65565 NA other downstream 1226256 20957135 ~ 20957635 (+)
G65575 nav3 other downstream 1293296 21024175 ~ 21024574 (+)
agbl5 NA other downstream 1709530 21440409 ~ 21549162 (+)
gen1 gen1 other downstream 1898908 21629787 ~ 21715437 (+)

Expression


Co-expression Network