G65347


Basic Information

Item Value
gene id G65347
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 19727307 ~ 19849574 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU88214
cttaaataaactttatttccaaaaaatatcccttacaaagaaacacagaggagaACAGGTGTCATTTACATTGATTATACAGGTAGAATAGAACAGGAAGCCCACAGCAGGCTGTGCTTATCATCTCTTCATCATTAACCACGCCCACATCCacaccagaccagaccagaccagacccaGCACActcagcagcagagggaggaggagaagatCAGCATTAGAATAAGCTGAACACAGTAACTCAGTCATTAGTGTTTacaatattaacattattacagAAATCACAGATCTGACCCAAAAGTCCGTTTTCATAGCAGAACCAGAAACTAAGCCCACTTACTGGAATGTGCATCAGCTGTAGTGAGTTACAGCGTTACAGAAAGAGTAACAACTAAGATATTCTTCATCTCAGAaggatctacacacacacacacacacacacacacacacacacacctggagaTAGCAGAAATAAAGTCCAGTGAAACAGCACACTTGTATTTGGGAGAGTCCAGCTGGTCGTCGTGTCCGACCTGGGTGAGGAGCTGCAGGGTGACCAGAGAGGAAATCTGCAGGACAGGataacacacacagtgctgat
>TU88215
tacacacacacacacacacacacacacacacacacacttatagtATGACGGTATTGCACCAGGTTAGCGGATAAGTCCGCTGTAAAATAATGAGGATTGGTCAGGTGTGGgacaaaatatacatttttgaaatATCGTATAATTTTAATTTGTGATACATTATTGATACATGACATCCAATAGCTCTCTAAGACTCGCCACCCAATTTAGACTTactacagttactgcttcattgcTCCACGTGGTGGCGctaattaaatgaatagggtaaacctgcagagaagaatattggttgtgaaGTTTTGTAaatctgacaccaataaatccatactTCCCAGTATGTACattttagaagtattttaacctcttcagtaacacagatgccgtgaagtatcacagaatcacagtatcgtgatCTTAACATTATCACAGGCAATTTATCCTGATATTGTGTCACGTAATGCCCTCTGATTACCATTCCTAATAATGGCTTCTGGCATGTTCGTGTATAAGCTAATACACTTATTGCAGGGATAGAGTTTTAAAAGTGCCCaagacttttgcacagtactgttaattaatcattaatacagtttattagatttaatttgcttttttaatgcagaaaaaGACCCATGATTAGCTGGGATTGGTTAAAATCTCATTTAGATCTACTTTTACATCACATTAAGACATCATCTgacttaaataaactaaaataaattgaaaatatgAAATTTATTCCACATTTATAGTATAATAACCTTTTAAAGCTGGGTAGCTTTCCCTTTAGTCACTAGCACACCCTTGTGGTTGCTCTGATGTAGTGCagttgggtgttttttttttttgttaggctGGGTACAGCTGATGTTGGCAGTGACTATTATGGCCTTATGAAGAAACTGTGTGAACAAGACTTTGGCAAAATAGCagaataaagaaacaaattatacatttattttaaaagaaaaaaaaatctaaatgtttgTTGGTCAGTAAATCTGTTATTGTCTGCTATTTGTCTGCCTCTCCCTTTGACTATGTTGTTAGCACACCTACCTTATATCTACatctactggccactttattagaaacatgtaCACTTTGTAAATGTACAATTGCAGACACAGTCTAAATCAAAATAGGTAAAAGGTGCAGTGACACACAGTCCAGACCAAAGAACCAAAACTTCCTTTCTCTAAAAGTGGTGGTCTCTGTCCAGATCTACTAAACCATGGTccagtttgtttgcagtgtaaaacacttttttgatcGGTTCTGACCTGGTTCAAAtaaattacaggaagttgaggcaggctaacatcacccattaaacaatagaagaagaaaaagaagcactGTTGTTTTAAAATCTGTCTCCCCTTGGCATGTAGCTGtgcagcagtatgggtacaacagattatgctggtgattctgtatatactgtaactgtagattaacccttttatataaacagaaataaaattaatgtgaTGGGTATCTGTTACTCATTCTGCTGTAGAAGGCATCAGTAACCGAAGGGAGTAAAGATTCTTGCAGGAAgacagaattcagcacaacacttgAAAAAGCAGCTTGCAGAACTATAAATCAGTATGGAGTATAGGGAGACTTTGCCCATGTAGTTaatgatgacaggatgtagtcactaaactgaactaaatgtacaaaatacaatatatcaaaCACATAAAAGTTGGTCCCTTAAGGATTAGAGCAAAAAGCCATCCCCACAATATCTGGTTAGTGGTAGTCCTACGGTggtctgataaagtggccaaaaagtGTAGGAACAAGGTAGGTGGTGCTACTAAACTGAAAAATAGGTGTGCAGTATAAACACCTATatatacttacacacacatactcagcttccctctctctttcaaaaCCCCATAGATACATCATCACACACTCGCCTCCCATTCACatactgtctctgtctctctctctttttcttgccctctctcttctctttttacaGGTATCCTCCCAtacagagcagcagcaggatgTGTACAGTCAGTAAGTAGACAGATACTAGTAGCGGGGTTCGCTGACGGGAACAGAAAGCTCCTCTCAGAATCCGCAGCAGACCAGGACC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU88214 False 601 lncRNA 0.44 2 19727307 19779459
TU88215 True 2128 lncRNA 0.37 2 19776918 19849574

Neighbor

gene id symbol gene type direction distance location
lhfpl3 lhfpl3 coding downstream 12864 19665559 ~ 19714443 (-)
sema3c sema3c,LOC107680038,LOC107694195,LOC106576426 coding downstream 211924 19409298 ~ 19515383 (-)
LOC103035518 nptx1l,LOC108435874 coding downstream 605847 19111133 ~ 19121460 (-)
LOC103035404 zgc:153845,LOC103035404,LOC108435855,LOC104925609,LOC106601411 coding downstream 1008677 18717502 ~ 18718630 (-)
tspan10 NA coding downstream 1137237 18586569 ~ 18590070 (-)
acss3 acss3,LOC107755903,LOC107749070 coding upstream 204377 20053951 ~ 20064790 (-)
myf5 myf5,LOC107734855 coding upstream 333520 20183094 ~ 20189701 (-)
myf6 myf6 coding upstream 352524 20202098 ~ 20205655 (-)
syt1 syt1,syt1a,LOC107694178,LOC107755909 coding upstream 673281 20522855 ~ 20810711 (-)
nav3 nav3 coding upstream 1133578 20983152 ~ 21356508 (-)
G65339 NA non-coding downstream 55190 19669547 ~ 19672117 (-)
G65277 NA non-coding downstream 115429 19610935 ~ 19611878 (-)
G65276 NA non-coding downstream 116818 19609454 ~ 19610489 (-)
G65279 NA non-coding downstream 120806 19606290 ~ 19606501 (-)
G65273 NA non-coding downstream 134194 19592294 ~ 19593113 (-)
G65375 NA non-coding upstream 63714 19913288 ~ 19913569 (-)
G65407 NA non-coding upstream 313709 20163283 ~ 20163492 (-)
G65408 NA non-coding upstream 318060 20167634 ~ 20167986 (-)
G65409 NA non-coding upstream 321863 20171437 ~ 20174765 (-)
G65416 NA non-coding upstream 342623 20192197 ~ 20192423 (-)
ndufb2 ndufb2 other downstream 121582 19600214 ~ 19605725 (-)
cdr2l cdr2l,LOC107665638,LOC107743016 other downstream 356599 19305987 ~ 19370708 (-)
G65231 alyref,LOC107665635,LOC107748861,LOC107743018,LOC107654581 other downstream 443275 19280302 ~ 19284032 (-)
G65184 LOC108435872,LOC108274344,LOC107731677,LOC107558868 other downstream 703649 18898185 ~ 19023658 (-)
LOC111192971 LOC108435850 other downstream 1076964 18638307 ~ 18650343 (-)
ost4 NA other upstream 1695844 21545418 ~ 21574199 (-)
G65803 gen1 other upstream 1780384 21629958 ~ 21684828 (-)
G66081 bcap29 other upstream 2441111 22290685 ~ 22291682 (-)
dusp16 dusp16 other upstream 3203699 23053273 ~ 23160179 (-)
G66619 NA other upstream 4658260 24507834 ~ 24508281 (-)

Expression


Co-expression Network