llph (llph)


Basic Information

Item Value
gene id llph
gene name llph
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 19795154 ~ 19799602 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU88246
GGATGTACATATCGACGGGTCGCagaactcgacagaacaccacaGGCGTCTAAGCGCTGTCGCAACTAGCGTTGTCGCAAAATCACTAACCCAGGGTTCAGTTTCCGGCACAGAGGAacacgtgtgtgtttgtgtgtgtgttctctttaATAAGCGAGCAGATATTCAGAGCGATGGCAAAGAGTTTGCGCAGTAAATGGAGGAGGAAGATGAGAgcggagaagaggaagaaggtcGCTCCGAAGGAACTGGCTCGACTCAAATCCACTCTGGGTCAGGGAGAAAACGGAGAGATCACCATGAAGGACATGGCCGAGATCGCGACTGTGGTTCCTGTTCATAAACTGAAGCAGAAATCAGAAGACGTGGAGATGAAGACAGAGGAAGGCGagtatacacagacacacacacacacacactattaacaGGGACATGAACATGAACCTTCTGCTCCAATTCActtaaaac
>XM_015601150.2
TCGCagaactcgacagaacaccacaGGCGTCTAAGCGCTGTCGCAACTAGCGTTGTCGCAAAATCACTAACCCAGGGTTCAGTTTCCGGCACAGAGGAacacgtgtgtgtttgtgtgtgtgttctctttaATAAGCGAGCAGATATTCAGAGCGATGGCAAAGAGTTTGCGCAGTAAATGGAGGAGGAAGATGAGAgcggagaagaggaagaaggtcGCTCCGAAGGAACTGGCTCGACTCAAATCCACTCTGGGTCAGGGAGAAAACGGAGAGATCACCATGAAGGACATGGCCGAGATCGCGACTGTGGTTCCTGTTCATAAACTGAAGCAGAAATCAGAAGACGTGGAGATGAAGACAGAGGAAGACGGACCAAGTAAAATGGAGATGGACAGTAAGCGCAGTAAGAAGACGATGCTGGATGAGCACGGACAGTACCCCAAGTGGATGAACCAGCGGCAGGCCAAGAAGCTGAAGAGCAAACGCAAGGCAGTCAAAGGAAAACACAAGCTGAAGAAGGGCGTGGCCTGGTAGACCCGCCCTCTACCTATCCGGACTTTATCTTCACTGAGTTCTGATTCAGCTAGTTTTAACTCACAGGGTTTGGCCACACCCTCTGAATCTGCTGGCAGGGGGGCGGTGCTTGATTTTGGATAAATGGAGAAGGCGGATCCTAATGCTGTAGGGTTCTGCTGGCTGGGATTATTGTATCTGATGTACAGTAACTGTGTGTGAACTGCTGGGTTAATGTCTTGTTGGATGATTGAGAATGATCTGTATTGTAATGATGTGCATCCTGATAGAGAGATGGACAGTGATACTGCATTTCTCTGCAGTAGAATCAGAGATATAATAATctgtaatattaaaaaactACAGGAATAGTCCAGTACTGTCCAAACTTAAATCTTCATCTGCAACAATAAccattcaaaatattttttttttaacagcatgaATAATGTCATGTTAGGTGATTACCTTAAACTATGTCATTTTGTTGATTTAccataaataaaatcacttttggTCAATGGATACAAACAATG

Function

symbol description
llph Predicted to enable basal RNA polymerase II transcription machinery binding activity. Predicted to be involved in dendrite extension and positive regulation of dendritic spine development. Predicted to be located in chromosome. Predicted to be active in nucleolus. Is expressed in several structures, including alar plate midbrain region; digestive system; eye; lens placode; and midbrain. Orthologous to human LLPH (LLP homolog, long-term synaptic facilitation factor).

NR:

description
PREDICTED: protein LLP homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU88246 False 468 TUCP 0.49 2 19797679 19799602
XM_015601150.2 True 1050 mRNA 0.45 3 19795154 19799583

Neighbor

gene id symbol gene type direction distance location
guca1a guca1a,LOC107590762,LOC107755893 coding downstream 56735 19732755 ~ 19738419 (-)
lhfpl3 lhfpl3 coding downstream 80711 19665559 ~ 19714443 (-)
sema3c sema3c,LOC107680038,LOC107694195,LOC106576426 coding downstream 279771 19409298 ~ 19515383 (-)
LOC103035518 nptx1l,LOC108435874 coding downstream 673694 19111133 ~ 19121460 (-)
LOC103035404 zgc:153845,LOC103035404,LOC108435855,LOC104925609,LOC106601411 coding downstream 1076524 18717502 ~ 18718630 (-)
acss3 acss3,LOC107755903,LOC107749070 coding upstream 254349 20053951 ~ 20064790 (-)
myf5 myf5,LOC107734855 coding upstream 383492 20183094 ~ 20189701 (-)
myf6 myf6 coding upstream 402496 20202098 ~ 20205655 (-)
syt1 syt1,syt1a,LOC107694178,LOC107755909 coding upstream 723253 20522855 ~ 20810711 (-)
nav3 nav3 coding upstream 1183550 20983152 ~ 21356508 (-)
G65359 LOC103037311 non-coding downstream 2010 19792783 ~ 19793144 (-)
G65354 golgb1,LOC108279640 non-coding downstream 25285 19768182 ~ 19769869 (-)
G65342 NA non-coding downstream 45486 19746885 ~ 19749668 (-)
G65339 NA non-coding downstream 123037 19669547 ~ 19672117 (-)
G65277 NA non-coding downstream 183276 19610935 ~ 19611878 (-)
G65363 NA non-coding upstream 4704 19804306 ~ 19805426 (-)
G65364 NA non-coding upstream 5918 19805520 ~ 19806601 (-)
G65375 NA non-coding upstream 113686 19913288 ~ 19913569 (-)
G65407 NA non-coding upstream 363681 20163283 ~ 20163492 (-)
G65408 NA non-coding upstream 368032 20167634 ~ 20167986 (-)
ndufb2 ndufb2 other downstream 189429 19600214 ~ 19605725 (-)
cdr2l cdr2l,LOC107665638,LOC107743016 other downstream 424446 19305987 ~ 19370708 (-)
G65231 alyref,LOC107665635,LOC107748861,LOC107743018,LOC107654581 other downstream 511122 19280302 ~ 19284032 (-)
G65184 LOC108435872,LOC108274344,LOC107731677,LOC107558868 other downstream 771496 18898185 ~ 19023658 (-)
LOC111192976 NA other downstream 1082634 18624875 ~ 18712520 (-)
ost4 NA other upstream 1745816 21545418 ~ 21574199 (-)
G65803 gen1 other upstream 1830356 21629958 ~ 21684828 (-)
G66081 bcap29 other upstream 2491083 22290685 ~ 22291682 (-)
dusp16 dusp16 other upstream 3253671 23053273 ~ 23160179 (-)
G66619 NA other upstream 4708232 24507834 ~ 24508281 (-)

Expression


Co-expression Network