G65442


Basic Information

Item Value
gene id G65442
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 20328879 ~ 20329924 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU88336
aaagtgatttatcgtggcaaattatgccctgtgtcacacagtctgaagggtgtttggacaaacagttaaaatgtctggatctctgaacgctgtgatagggcggaggtgtgctattcattaaaggtaagtatgctttatcatgttttactacaccaaaagttaattttacaccggagttctacTttaacttagttagctacccctcaaaaccacccagcggtgagacctgctgaattagaagttccttatagtgtcttttAAAATGCGCCTGATAATCCAGTAATCTGATATGTactttaggctttttttttaatgtgacccaTATCTGACGTTTGTCTGAACGGCTTGCACTTTGTAAATTACACACACGCGCAAGAGAGTTACGCTTCACAttaagttttggtttcatcCTCATCAAAATGTCAAGAGCTATGAATGATTTTAGACTACACCTGAGCCTACCACCTAGAATTCGCCCCCAGCCTCAATAAAAGAGACACATTATTTGACCTCGGTCAGGCTTTTAGCCTTGCAACAGcaatgtgtttctgtgtttggcCAGTTTATTAGGAACACTGTATGGCTACAACACAAGCCTTTAAATATCATTGGAAGAAACACATT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU88336 True 624 lncRNA 0.40 2 20328879 20329924

Neighbor

gene id symbol gene type direction distance location
rps16 rps16,LOC103382554 coding upstream 62682 20262580 ~ 20266197 (+)
lin7a lin7a coding upstream 155575 20155055 ~ 20173304 (+)
ppfia2 ppfia2 coding upstream 274831 19839195 ~ 20054048 (+)
golgb1 NA coding upstream 549416 19749310 ~ 19779463 (+)
orc5 orc5 coding upstream 600708 19715788 ~ 19728171 (+)
pawr LOC108434155,LOC108434154 coding downstream 87588 20417512 ~ 20497661 (+)
LOC111192985 LOC107688027,LOC107751101,LOC107731862,LOC106606817,LOC106579815,LOC107570926 coding downstream 263742 20593666 ~ 20595301 (+)
tmem214 tmem214,LOC104961504,LOC106608390 coding downstream 1080925 21410849 ~ 21438210 (+)
msgn1 NA coding downstream 1385528 21715452 ~ 21716948 (+)
tmem19 tmem19,LOC107719866,LOC107687559 coding downstream 1575335 21905259 ~ 21911577 (+)
G65435 NA non-coding upstream 94261 20233986 ~ 20234618 (+)
G65427 NA non-coding upstream 105980 20222100 ~ 20222899 (+)
G65403 NA non-coding upstream 154136 20173370 ~ 20174743 (+)
G65405 NA non-coding upstream 161427 20167147 ~ 20167452 (+)
G65404 NA non-coding upstream 177322 20151233 ~ 20151557 (+)
G65471 NA non-coding downstream 170850 20500774 ~ 20501708 (+)
G65468 NA non-coding downstream 176783 20506707 ~ 20508447 (+)
G65476 NA non-coding downstream 221269 20551193 ~ 20554372 (+)
G65482 NA non-coding downstream 237439 20567363 ~ 20569105 (+)
G65494 NA non-coding downstream 415052 20744976 ~ 20750081 (+)
LOC103037311 LOC103037311,LOC103358095,LOC106514816,LOC107386321 other upstream 534554 19780663 ~ 19794325 (+)
alyref alyref,LOC107743018,LOC107665635,LOC107748861 other upstream 988000 19280292 ~ 19340879 (+)
LOC103044219 mcrip1,fam195b,LOC107654575 other upstream 1049362 19276802 ~ 19279517 (+)
LOC103045528 NA other upstream 1050808 19223209 ~ 19278071 (+)
G64990 si:dkey-282h22.5,LOC108261121 other upstream 1705380 18556128 ~ 18623499 (+)
G65565 NA other downstream 627211 20957135 ~ 20957635 (+)
G65575 nav3 other downstream 694251 21024175 ~ 21024574 (+)
agbl5 NA other downstream 1110485 21440409 ~ 21549162 (+)
gen1 gen1 other downstream 1299863 21629787 ~ 21715437 (+)
ccdc167 NA other downstream 2609631 22939555 ~ 22949199 (+)

Expression


Co-expression Network