G65468


Basic Information

Item Value
gene id G65468
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 20506707 ~ 20508447 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU88374
ATATCGAGGACGAGAATGAGCAGCTGAAGCAGGAGAACAAGACCCTGCTGAAGGTGGTGGGTCAGCTGACGAGGTAGAACGTCCCGGAACCCAGAGAAAAACATGGCGTGTTTCTGCTTGGGCCTGTTCAACATAACCTGTCcgtgtctctgtctgtgaggaggatgaggatgatgatgatgctggtgTGGGGATGATTAAGATGAAGATGATGTGTGTATGATGTCAGCAGGCTATGATGttctatttaatgtaaatgtgtgtatacgTGTACGTACAGCGTTCAGGTTCGGAAGTTTACGAACTGTCACTACGTTAAAAATTGGATGTACCGTCTTGATTTCACCCGATTGTTTTTCTACGTATGCAGAAAGGGCCCTGACCTACGGCCGTGTGCAAAAGTATTAGTACCCCTCTACTTCAGTGTACTGTtgaaattattgtttttgaGCTTAAATAAACCACATTCACACTCTACCTAGGAAattctgcacattttaataGACAATTACTGTTAATGTACTGAATTTAATAGATAGTAcatgtacatttacattaaaaaaaatgtttcaataaataatataatgctttataaactgTATTAGAACtttaccaatagaaatgctttaaaattacttggaattaaatttttttacagtgacttTTTACATTCTATTGAGTTAagttaagaagttttttttcccttactgttttggagataaaaggttttttttgtatgaaagcatagatgtatataatacataagggacatattattacataattacCAATATATAATCCAAAAAAGACTACAATCAGAAATACTATTTGCAGCACCAGTCAAACATTTGTAcattgaatataaaataaaaaatatttgttgcatTTGTTGCATCCCAGTATTACTATTGGACAAAAATCCTTGTATGTCCATTTTGTCTTTTCCCCTAAATCTGTCTGACTAATTTTTTATATCGTATCAATATTTCAAGatgaatggatcaatagaaatactccaaaatgaaaattaagtcttaattacaattacatccAAAGAGAgacatatgtttttttccttcttctataaatgttatattatgGATATATGCATTTTTGGGATACAGTGACAATATACGCTTTTACAATATGAAATCCagcaaataatcaataattgtgAATTAAAATGTGCTGCTGTATATCACTGAAGCGTTTGCACACGGCTGTACAGTTATTCAGACTgtctgagctgtgtgtgtgtgtgtgtgtgtgtgtgtgtggtgtctgtaAGATGAAAACCGAGTCATTGCCACCAAAATGAAAAGGAAATGGGTTTTTCTGGGCCAAAGTGGGTGTAATGCCCTGCACATTACCACTGAGCGTCCAGCACACACTGTGCTTTACCCCCCCACAGTACAGATGCATCGATGCAGAGCTCTGAGACCATCTCAAACTATTAATGTTGATTTGCATATTCTATTTGCAGATTATGATATGTAAACATTtcttaaatgtaacaaaattaaGATTAAATATGTCTGGATCAGATTTACagaatttatttacagaaaataaagaacattA
>TU88375
CATTCTATTGAGTTAagttaagaagttttttttcccttactgttttggagataaaaggttttttttgtatgaaagcatagatgtatataatacataagggacatattattacataattacCAATATATAATCCAAAAAAGACTACAATCAGAAATACTATTTGCAGCACCAGTCAAACATTTGTAcattgaatataaaataaaaaatatttgttgcatTTGTTGCATCCCAGTATTACTATTGGACAAAAATCCTTGTATGTCCATTTTGTCTTTTCCCCTAAATCTGTCTGACTAATTTTTTATATCGTATCAATATTTCAAGatgaatggatcaatagaaatactccaaaatgaaaattaagtcttaattacaattacatccAAAGAGAgacatatgtttttttccttcttctataaatgttatattatgGATATATGCATTTTTGGGATACAGTGACAATATACGCTTTTACAATATGAAATCCagcaaataatcaataattgtgAATTAAAATGTGCTGCTGTATATCACTGAAGCGTTTGCACACGGCTGTACAGTTATTCAGACTgtctgagctgtgtgtgtgtgtgtgtgtgtgtgtgtgtggtgtctgtaAGATGAAAACCGAGTCATTGCCACCAAAATGAAAAGGAAATGGGTTTTTCTGGGCCAAAGTGGGTGTAATGCCCTGCACATTACCACTGAGCGTCCAGCACACACTGTGCTTTACCCCCCCACAGTACAGATGCATCGATGCAGAGCTCTGAGACCATCTCAAACTATTAATGTTGATTTGCATATTCTATTTGCAGATTATGATATGTAAACATTtcttaaatgtaacaaaattaaGATTAAATATGTCTGGATCAGATTTACagaatttatttacagaaaataaagaacattACGTCATTGTTAGTAcaaaatttcttttttcttttttttctttttttaaattttttggtATTATTTAAAAGCTGCAACTGTTTTTCACACTTTGTTAAAATTTCAAGACCAACAGACCATTAGAAATACagttacatacagtaaaaatgtaagATTGATTT
>TU88376
ATATCGAGGACGAGAATGAGCAGCTGAAGCAGGAGAACAAGACCCTGCTGAAGGTGGTGGGTCAGCTGACGAGGTAGAACGTCCCGGAACCCAGAGAAAAACATGGCGTGTTTCTGCTTGGGCCTGTTCAACATAACCTGTCcgtgtctctgtctgtgaggaggatgaggatgatgatgatgctggtgTGGGGATGATTAAGATGAAGATGATGTGTGTATGATGTCAGCAGGCTATGATGttctatttaatgtaaatgtgtgtatacgTGTACGTACAGCGTTCAGGTTCGGAAGTTTACGAACTGTCACTACGTTAAAAATTGGATGTACCGTCTTGATTTCACCCGATTGTTTTTCTACGTATGCAGAAAGGGCCCTGACCTACGGCCGTGTGCAAAAGTATTAGTACCCCTCTACTTCAGTGTACTGTtgaaattattgtttttgaGCTTAAATAAACCACATTCACACTCTACCTAGGAAattctgcacattttaataGACAATTACTGTTAATGTACTGAATT

Function

GO:

id name namespace
GO:0036344 platelet morphogenesis biological_process
GO:0030220 platelet formation biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU88374 True 1581 lncRNA 0.35 1 20506707 20508287
TU88375 False 1073 lncRNA 0.31 1 20507375 20508447
TU88376 False 529 lncRNA 0.43 1 20506707 20507235

Neighbor

gene id symbol gene type direction distance location
pawr LOC108434155,LOC108434154 coding upstream 9046 20417512 ~ 20497661 (+)
ppp1r12a ppp1r12a coding upstream 108740 20299702 ~ 20397967 (+)
rps16 rps16,LOC103382554 coding upstream 240510 20262580 ~ 20266197 (+)
lin7a lin7a coding upstream 333403 20155055 ~ 20173304 (+)
ppfia2 ppfia2 coding upstream 452659 19839195 ~ 20054048 (+)
LOC111192985 LOC107688027,LOC107751101,LOC107731862,LOC106606817,LOC106579815,LOC107570926 coding downstream 85219 20593666 ~ 20595301 (+)
tmem214 tmem214,LOC104961504,LOC106608390 coding downstream 902402 21410849 ~ 21438210 (+)
msgn1 NA coding downstream 1207005 21715452 ~ 21716948 (+)
tmem19 tmem19,LOC107719866,LOC107687559 coding downstream 1396812 21905259 ~ 21911577 (+)
rab21 rab21,zgc:154045,LOC106609839,LOC107687573,LOC107690748 coding downstream 1424322 21932769 ~ 21956278 (+)
G65471 NA non-coding upstream 4999 20500774 ~ 20501708 (+)
G65442 NA non-coding upstream 176783 20328879 ~ 20329924 (+)
G65435 NA non-coding upstream 272089 20233986 ~ 20234618 (+)
G65427 NA non-coding upstream 283808 20222100 ~ 20222899 (+)
G65403 NA non-coding upstream 331964 20173370 ~ 20174743 (+)
G65476 NA non-coding downstream 42746 20551193 ~ 20554372 (+)
G65482 NA non-coding downstream 58916 20567363 ~ 20569105 (+)
G65494 NA non-coding downstream 236529 20744976 ~ 20750081 (+)
LOC111192987 NA non-coding downstream 323573 20832020 ~ 20834853 (+)
G65564 NA non-coding downstream 448404 20956851 ~ 20957079 (+)
LOC103037311 LOC103037311,LOC103358095,LOC106514816,LOC107386321 other upstream 712382 19780663 ~ 19794325 (+)
alyref alyref,LOC107743018,LOC107665635,LOC107748861 other upstream 1165828 19280292 ~ 19340879 (+)
LOC103044219 mcrip1,fam195b,LOC107654575 other upstream 1227190 19276802 ~ 19279517 (+)
LOC103045528 NA other upstream 1228636 19223209 ~ 19278071 (+)
G64990 si:dkey-282h22.5,LOC108261121 other upstream 1883208 18556128 ~ 18623499 (+)
G65565 NA other downstream 448688 20957135 ~ 20957635 (+)
G65575 nav3 other downstream 515728 21024175 ~ 21024574 (+)
agbl5 NA other downstream 931962 21440409 ~ 21549162 (+)
gen1 gen1 other downstream 1121340 21629787 ~ 21715437 (+)
ccdc167 NA other downstream 2431108 22939555 ~ 22949199 (+)

Expression


Co-expression Network