G65476


Basic Information

Item Value
gene id G65476
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 20551193 ~ 20554372 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU88386
agttaaaataaagctaagctagctagttacattaaagctaggctggctagttaaaataaagccaagctagctagttacattaaagctaggctggctagttaaattaaagctaggctggctagttaaattaaagcaaaggtagctagttaacttaaagctaggttagctagtagctaggttggctagttaaactaaagataaagtagctagttaacttaaagctaggttagctagttaaactatagctaaggtagctagttataactcatAATTTAAATTGTGTTGACTAAGCAGTTTAGCAAGAATGTACACCTCACTATaatttttaaacttcttaaaaaaCTTAGCCTTATTATCAGCATGTGGATTCTTTAAACTGTGTTATGATGAGCTACTGTTTAAATTAAGGACTCACCTTGCCAGATAACTTTAGAAGGACTGCGGGGAGGTTTCTGTTGGGTCAGAGTCAGGTATCCAGCTGGTTGACACAGTGCTCACTGCATTGGTCCCTCCGTCCAAGAAACGAGGGCAAACCATAACCTGTAtattcattcagttcattcaatCTGAGAGCCAATTTTAGCGTCTTTTCTCCGAACATCATCCAAAGCATAGTCCCGCCCTATCGCGCTGTAACTGCTGATACTTGTTTGTCTAAATCTTCTGCTCTTGCAGTCCAATCACAGAACGCTTTTccccagagttgccaggttcgcggTTATCCTGCCAAATTTGGCTTGTCTGAAAACCACAGGTACATTTTTGCTCAATCTTCAAACTGAAAATGTAACAATGCGCTCTTTGCACAACTACTTCCGCATTCTCATCAGTGCTGCTCGAGCGTTTCCTGTTTGGATTTTCTAATACACTCGCTATGG
>TU88392
gttaaatttaaaatgtagattgactgactgactggtcGAATGTGCAGATACCAATATAGCTAAAATGGTAACTGTAACAGCAATGGCAACATATGAACATGACTTATCAATTATTATGTACCATTTATTACCACATATTTTGCAGTGTACTATATATTGTACTTTATATTTTGAACAATATACTTCACTATGTAttcaagaatatattttaatatattactatCAATAATACACATACCATCTATTACCACACatcacaatttattttattatatatttaacaatacaCTTCACTATAAATTCAAGAatatatactaccatatactactatatgtataatacaaaaacagataaaggtatGCTTAAAGTTCAGAAAAACATCAACATTAAAGAGTTCCATCAGTAGCACTCGTGCCGTCCCACTGGCTGTAGCTTGTGCTTTTGCAGTCTTCCAACAATGGGCTGAGACAGTGATGGTGCCTTCCTTCCCCAGTTTCACCTTATAACAaaggaagaaaatgagaaataaacaaacaatgacCACCAGCAACACAATGCTACTTAGTTACAAGTGGGTCCGAATACTCTtagattaaaaacaagtttcaGTATTTGGAACCCACCGCTAACAAGCCTAATTTAAAGGTAAACTGTGATAGTTTAATAATGTACAGCTAAAtccttaatacaaaataaattagcaTAGCTATTTCATGGGATAAAGTGAgatagctagattagctaattaaaacatatctcaaagctaatttagctagctaactagttaacttaaagctaagttagctagtaataaatccaaaattaaagataggttaactagttataacataaattaaagataggttagctaattataacttataaatgaatgctaggttagctagctataaattataacttaaag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU88386 False 878 lncRNA 0.40 2 20552464 20554372
TU88392 True 925 lncRNA 0.30 2 20551193 20552933

Neighbor

gene id symbol gene type direction distance location
pawr LOC108434155,LOC108434154 coding upstream 53532 20417512 ~ 20497661 (+)
ppp1r12a ppp1r12a coding upstream 153226 20299702 ~ 20397967 (+)
rps16 rps16,LOC103382554 coding upstream 284996 20262580 ~ 20266197 (+)
lin7a lin7a coding upstream 377889 20155055 ~ 20173304 (+)
ppfia2 ppfia2 coding upstream 497145 19839195 ~ 20054048 (+)
LOC111192985 LOC107688027,LOC107751101,LOC107731862,LOC106606817,LOC106579815,LOC107570926 coding downstream 39294 20593666 ~ 20595301 (+)
tmem214 tmem214,LOC104961504,LOC106608390 coding downstream 856477 21410849 ~ 21438210 (+)
msgn1 NA coding downstream 1161080 21715452 ~ 21716948 (+)
tmem19 tmem19,LOC107719866,LOC107687559 coding downstream 1350887 21905259 ~ 21911577 (+)
rab21 rab21,zgc:154045,LOC106609839,LOC107687573,LOC107690748 coding downstream 1378397 21932769 ~ 21956278 (+)
G65468 NA non-coding upstream 42746 20506707 ~ 20508447 (+)
G65471 NA non-coding upstream 49485 20500774 ~ 20501708 (+)
G65442 NA non-coding upstream 221269 20328879 ~ 20329924 (+)
G65435 NA non-coding upstream 316575 20233986 ~ 20234618 (+)
G65427 NA non-coding upstream 328294 20222100 ~ 20222899 (+)
G65482 NA non-coding downstream 12991 20567363 ~ 20569105 (+)
G65494 NA non-coding downstream 190604 20744976 ~ 20750081 (+)
LOC111192987 NA non-coding downstream 277648 20832020 ~ 20834853 (+)
G65564 NA non-coding downstream 402479 20956851 ~ 20957079 (+)
LOC111192878 NA non-coding downstream 403331 20957703 ~ 20958378 (+)
LOC103037311 LOC103037311,LOC103358095,LOC106514816,LOC107386321 other upstream 756868 19780663 ~ 19794325 (+)
alyref alyref,LOC107743018,LOC107665635,LOC107748861 other upstream 1210314 19280292 ~ 19340879 (+)
LOC103044219 mcrip1,fam195b,LOC107654575 other upstream 1271676 19276802 ~ 19279517 (+)
LOC103045528 NA other upstream 1273122 19223209 ~ 19278071 (+)
G64990 si:dkey-282h22.5,LOC108261121 other upstream 1927694 18556128 ~ 18623499 (+)
G65565 NA other downstream 402763 20957135 ~ 20957635 (+)
G65575 nav3 other downstream 469803 21024175 ~ 21024574 (+)
agbl5 NA other downstream 886037 21440409 ~ 21549162 (+)
gen1 gen1 other downstream 1075415 21629787 ~ 21715437 (+)
ccdc167 NA other downstream 2385183 22939555 ~ 22949199 (+)

Expression


Co-expression Network