G65516


Basic Information

Item Value
gene id G65516
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 20506707 ~ 20508282 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU88440
ttctttattttctgtaaataaattctGTAAATCTGATCCAGACATATTTAATCttaattttgttacatttaagaAATGTTTACATATCATAATCTGCAAATAGAATATGCAAATCAACATTAATAGTTTGAGATGGTCTCAGAGCTCTGCATCGATGCATCTGTACTGTGGGGGGGTAAAGCACAGTGTGTGCTGGACGCTCAGTGGTAATGTGCAGGGCATTACACCCACTTTGGCCCAGAAAAACCCATTTCCTTTTCATTTTGGTGGCAATGACTCGGTTTTCATCTtacagacaccacacacacacacacacacacacacacacagctcagacAGTCTGAATAACTGTACAGCCGTGTGCAAACGCTTCAGTGATATACAGCAGCACATTTTAATTcacaattattgattatttgctGGATTTCATATTGTAAAAGCGTATATTGTCACTGTATCCCAAAAATGCATATATCcataatataacatttatagaagaaggaaaaaaacatatgtcTCTCTTTggatgtaattgtaattaagacttaattttcattttggagtatttctattgatccattcatCTTGAAATATTGATACGATATAAAAAATTAGTCAGACAGATTTAGGGGAAAAGACAAAATGGACATACAAGGATTTTTGTCCAATAGTAATACTGGGATGCAACAAatgcaacaaatattttttattttatattcaatgTACAAATGTTTGACTGGTGCTGCAAATAGTATTTCTGATTGTAGTCTTTTTTGGATTATATATTGgtaattatgtaataatatgtcccttatgtattatatacatctatgctttcatacaaaaaaaaccttttatctccaaaacagtaagggaaaaaaaacttcttaactTAACTCAATAGAATGTAAAaagtcactgtaaaaaaatttaattccaagtaattttaaagcatttctattggtaaaGTTCTAATAcagtttataaagcattatattatttattgaaacattttttttaatgtaaatgtacatgTACTATCTATTAAATTCAGTACATTAACAGTAATTGTCtattaaaatgtgcagaatTTCCTAGGTAGAGTGTGAATGTGGTTTATTTAAGCtcaaaaacaataatttcaACAGTACACTGAAGTAGAGGGGTACTAATACTTTTGCACACGGCCGTAGGTCAGGGCCCTTTCTGCATACGTAGAAAAACAATCGGGTGAAATCAAGACGGTACATCCAATTTTTAACGTAGTGACAGTTCGTAAACTTCCGAACCTGAACGCTGTACGTACAcgtatacacacatttacattaaatagaaCATCATAGCCTGCTGACATCATACACACATCATCTTCATCTTAATCATCCCCAcaccagcatcatcatcatcctcatcctcctcacagacagagacacgGACAGGTTATGTTGAACAGGCCCAAGCAGAAACACGCCATGTTTTTCTCTGGGTTCCGGGACGTTCTACCTCGTCAGCTGACCCACCACCTTCAGCAGGGTCTTGTTCTCCTGCTTCAGCTGCTCATTCTCGTCCTCGATAT
>TU88441
GGTAGAGTGTGAATGTGGTTTATTTAAGCtcaaaaacaataatttcaACAGTACACTGAAGTAGAGGGGTACTAATACTTTTGCACACGGCCGTAGGTCAGGGCCCTTTCTGCATACGTAGAAAAACAATCGGGTGAAATCAAGACGGTACATCCAATTTTTAACGTAGTGACAGTTCGTAAACTTCCGAACCTGAACGCTGTACGTACAcgtatacacacatttacattaaatagaaCATCATAGCCTGCTGACATCATACACACATCATCTTCATCTTAATCATCCCCAcaccagcatcatcatcatcctcatcctcctcacagacagagacacgGACAGGTTATGTTGAACAGGCCCAAGCAGAAACACGCCATGTTTTTCTCTGGGTTCCGGGACGTTCTACCTCGTCAGCTGACCCACCACCTTCAGCAGGGTCTTGTTCTCCTGCTTCAGCTGCTCATTCTCGTCCTCGATAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU88440 True 1576 lncRNA 0.35 1 20506707 20508282
TU88441 False 479 lncRNA 0.45 1 20506707 20507185

Neighbor

gene id symbol gene type direction distance location
myf6 myf6 coding downstream 301052 20202098 ~ 20205655 (-)
myf5 myf5,LOC107734855 coding downstream 317006 20183094 ~ 20189701 (-)
acss3 acss3,LOC107755903,LOC107749070 coding downstream 441917 20053951 ~ 20064790 (-)
guca1a guca1a,LOC107590762,LOC107755893 coding downstream 768288 19732755 ~ 19738419 (-)
lhfpl3 lhfpl3 coding downstream 792264 19665559 ~ 19714443 (-)
syt1 syt1,syt1a,LOC107694178,LOC107755909 coding upstream 14573 20522855 ~ 20810711 (-)
nav3 nav3 coding upstream 474870 20983152 ~ 21356508 (-)
LOC103044186 NA coding upstream 865950 21374232 ~ 21386459 (-)
mrps10 NA coding upstream 1301003 21809285 ~ 21818148 (-)
LOC103040407 NA coding upstream 1315614 21823896 ~ 21877702 (-)
G65513 LOC108434154 non-coding downstream 9177 20480703 ~ 20497530 (-)
G65459 NA non-coding downstream 118032 20388022 ~ 20388675 (-)
G65444 rps16 non-coding downstream 240509 20262657 ~ 20266198 (-)
G65439 NA non-coding downstream 270182 20236261 ~ 20236525 (-)
G65437 NA non-coding downstream 271537 20234703 ~ 20235170 (-)
G65517 NA non-coding upstream 859 20509141 ~ 20510895 (-)
G65518 NA non-coding upstream 12742 20521024 ~ 20521661 (-)
LOC111192986 NA non-coding upstream 42858 20551140 ~ 20554691 (-)
G65532 NA non-coding upstream 200567 20708849 ~ 20709669 (-)
G65541 NA non-coding upstream 362704 20870986 ~ 20873137 (-)
llph llph other downstream 707105 19795154 ~ 19799602 (-)
ndufb2 ndufb2 other downstream 900982 19600214 ~ 19605725 (-)
cdr2l cdr2l,LOC107665638,LOC107743016 other downstream 1135999 19305987 ~ 19370708 (-)
G65231 alyref,LOC107665635,LOC107748861,LOC107743018,LOC107654581 other downstream 1222675 19280302 ~ 19284032 (-)
G65184 LOC108435872,LOC108274344,LOC107731677,LOC107558868 other downstream 1483049 18898185 ~ 19023658 (-)
ost4 NA other upstream 1037136 21545418 ~ 21574199 (-)
G65803 gen1 other upstream 1121676 21629958 ~ 21684828 (-)
G66081 bcap29 other upstream 1782403 22290685 ~ 22291682 (-)
dusp16 dusp16 other upstream 2544991 23053273 ~ 23160179 (-)
G66619 NA other upstream 3999552 24507834 ~ 24508281 (-)

Expression


Co-expression Network