G65602


Basic Information

Item Value
gene id G65602
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 21148719 ~ 21151859 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU88559
aaaaaaaaacgtttgattGTGTCATCTGATTGGGActaataaaatctgaaaatatcTGATAGTATGATTGATTCTGATAACATTTGATAGAGTCTGGTAAGCTCTCTCTGATTCTGATAAAGTCTGATGAAATGTGATAGAGACTCAAAGAGTCTGATAAAGTCTGGTAAAGGTTGAGAGAGTCGGATGGAGTCTGATAAAGTTTGATAAAGCCTGATAGAGTCTGATAAAGTTTGATAAAGCCTGATAGAGTCTGATAAAGTCTGGTAAAGTGTGATAAAGCCTATGATTGATTCTGAAAACATCTGGTAAAGACTGGTAAGGTCTCTCTGATTCTGATAAAGTTTGATAAAGTCTGATAAAGTCTGATAAAGCCCGATAAAGTCTGATAAAGCCTGAAAAAGTCTGAAAAAGTCTGATAAAGTCTGATAAAGCCTGATAAAGCCTGAGAAAGTATGATGACGCCTGATAAAGTATGATGACGCCTGATAAAGTCTGATAAAGCCTGATAAAGCCTGATAAAGTATGATAACACCTGATAAAGTCTGATAAAGCCTGATAAAGTCTGATAAAGCCTGAAAAAGTCTGATAAAGTCTGATAAAGCCTGATAAAGCCTGATAAAGTCTGATAAAGCCTGATAAAGTCTGATAAAGTCTGA
>TU88560
aaaaaaaaacgtttgattGTGTCATCTGATTGGGActaataaaatctgaaaatatcTGATAGTATGATTGATTCTGATAACATTTGATAGAGTCTGGTAAGCTCTCTCTGATTCTGATAAAGTCTGATGAAATGTGATAGAGACTCAAAGAGTCTGATAAAGTCTGGTAAAGGTTGAGAGAGTCGGATGGAGTCTGATAAAGTTTGATAAAGCCTGATAGAGTCTGATAAAGTTTGATAAAGCCTGATAGAGTCTGATAAAGTCTGGTAAAGTGTGATAAAGCCTATGATTGATTCTGAAAACATCTGGTAAAGACTGGTAAGGTCTCTCTGATTCTGATAAAGTTTGATAAAGTCTGATAAAGTCTGATAAAGCCCGATAAAGTCTGATAAAGCCTGAAAAAGTCTGAAAAAGTCTGATAAAGTCTGATAAAGCCTGATAAAGCCTGAGAAAGTATGATGACGCCTGATAAAGTATGATGACGCCTGATAAAGTCTGATAAAGCCTGATAAAGCCTGATAAAGTATGATAACACCTGATAAAGTCTGATAAAGCCTGATAAAGTCTGATAAAGCCTGAAAAAGTCTGATAAAGTCTGATAAAGTCTGATAAAGTCTGATAAAGCCTGATAAAGTCTGATAAAGTCTGATAAAGCCTGATAAAGTCTGATAAAGTCTGATAAAGCCTGATAAAGCCTGATAAAGTCTGATAAAGCCTGATAAAGTCTGATAAAGTCTGA
>TU88562
GCCTGATAAAGTCTGATAAAGCCTGATAAAGTATGATAACACCTGATAAAGTCTGATAAAGCCTGATAAAGTCTGATAAAGCCTGAAAAAGTCTGATAAAGTCTGATAAAGCCTGATAAAGCCTGATAAAGTCTGATAAAGCCTGAAAAAGTCTGATAAAGCCTGAATAAAGCCTGATAAAGCCTGATAAAGTCTGATAAAGTCTGATAAAGTCTGATAATGTCTGATAAAGCCTGATAAAGTCTGATAAAGTCTGATAAAGCCTGATAAAGTCTGATAAAGCCTGATAAAGTCTGATAAAGCCTGATAAAGTCTGATAAAGCCTGATAAAGTCTGATAAAGTCTGATAAAGTCTGATAAAGTCTGATAAAGTCTGATAAAGCCTGATAAAGTCTGATAAAGTCTGATAAAGCCTGATAAAGTCTGATAAAGTCTGATAAAGCCTGATAAAGCCTGATAAAGTCTGATAAAGCCTGATAAAGTCTGATAAAGTCTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU88559 False 659 lncRNA 0.35 3 21148719 21151859
TU88560 True 739 lncRNA 0.35 3 21148719 21151859
TU88562 False 497 lncRNA 0.34 2 21148719 21150087

Neighbor

gene id symbol gene type direction distance location
syt1 syt1,syt1a,LOC107694178,LOC107755909 coding downstream 338008 20522855 ~ 20810711 (-)
myf6 myf6 coding downstream 943064 20202098 ~ 20205655 (-)
myf5 myf5,LOC107734855 coding downstream 959018 20183094 ~ 20189701 (-)
acss3 acss3,LOC107755903,LOC107749070 coding downstream 1083929 20053951 ~ 20064790 (-)
guca1a guca1a,LOC107590762,LOC107755893 coding downstream 1410300 19732755 ~ 19738419 (-)
LOC103044186 NA coding upstream 222373 21374232 ~ 21386459 (-)
mrps10 NA coding upstream 657426 21809285 ~ 21818148 (-)
LOC103040407 NA coding upstream 672037 21823896 ~ 21877702 (-)
LOC103040999 LOC103040999 coding upstream 814118 21965977 ~ 21970642 (-)
LOC111192879 NA coding upstream 837396 21989255 ~ 21990070 (-)
G65598 NA non-coding downstream 90360 21044474 ~ 21058359 (-)
G65597 NA non-coding downstream 114702 21032923 ~ 21034017 (-)
G65595 NA non-coding downstream 188639 20959801 ~ 20960080 (-)
G65594 NA non-coding downstream 191092 20957136 ~ 20957627 (-)
G65557 NA non-coding downstream 219286 20928507 ~ 20929433 (-)
G65615 NA non-coding upstream 72786 21224645 ~ 21225597 (-)
G65624 NA non-coding upstream 196880 21348739 ~ 21349113 (-)
G65625 NA non-coding upstream 205354 21357213 ~ 21357718 (-)
G65677 NA non-coding upstream 219203 21371062 ~ 21372122 (-)
LOC111192990 NA non-coding upstream 227125 21378984 ~ 21383407 (-)
llph llph other downstream 1349117 19795154 ~ 19799602 (-)
ndufb2 ndufb2 other downstream 1542994 19600214 ~ 19605725 (-)
cdr2l cdr2l,LOC107665638,LOC107743016 other downstream 1778011 19305987 ~ 19370708 (-)
G65231 alyref,LOC107665635,LOC107748861,LOC107743018,LOC107654581 other downstream 1864687 19280302 ~ 19284032 (-)
G65184 LOC108435872,LOC108274344,LOC107731677,LOC107558868 other downstream 2125061 18898185 ~ 19023658 (-)
ost4 NA other upstream 393559 21545418 ~ 21574199 (-)
G65803 gen1 other upstream 478099 21629958 ~ 21684828 (-)
G66081 bcap29 other upstream 1138826 22290685 ~ 22291682 (-)
dusp16 dusp16 other upstream 1901414 23053273 ~ 23160179 (-)
G66619 NA other upstream 3355975 24507834 ~ 24508281 (-)

Expression


Co-expression Network