G65633


Basic Information

Item Value
gene id G65633
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 21377246 ~ 21377776 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU88601
ccataattcacctgcacccactatcagacctcactccaactcccataattcacctgctcccactatcagacctcactccaactcccataattcacctgcacccactatcagacctcactccaactcccataattcacctgcacccactatcagacctcactccaactcccataattcacctgcacccactatcagagctcactccaactcccataattcacctgcacccactatca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU88601 True 236 lncRNA 0.50 3 21377246 21377776

Neighbor

gene id symbol gene type direction distance location
LOC111192985 LOC107688027,LOC107751101,LOC107731862,LOC106606817,LOC106579815,LOC107570926 coding upstream 781945 20593666 ~ 20595301 (+)
pawr LOC108434155,LOC108434154 coding upstream 879585 20417512 ~ 20497661 (+)
ppp1r12a ppp1r12a coding upstream 979279 20299702 ~ 20397967 (+)
rps16 rps16,LOC103382554 coding upstream 1111049 20262580 ~ 20266197 (+)
lin7a lin7a coding upstream 1203942 20155055 ~ 20173304 (+)
tmem214 tmem214,LOC104961504,LOC106608390 coding downstream 33073 21410849 ~ 21438210 (+)
msgn1 NA coding downstream 337676 21715452 ~ 21716948 (+)
tmem19 tmem19,LOC107719866,LOC107687559 coding downstream 527483 21905259 ~ 21911577 (+)
rab21 rab21,zgc:154045,LOC106609839,LOC107687573,LOC107690748 coding downstream 554993 21932769 ~ 21956278 (+)
ptprr ptprr coding downstream 616334 21994110 ~ 22100636 (+)
G65630 NA non-coding upstream 5125 21371050 ~ 21372121 (+)
G65626 NA non-coding upstream 17579 21359370 ~ 21359667 (+)
G65585 NA non-coding upstream 159983 21215935 ~ 21217263 (+)
G65576 nav3 non-coding upstream 351176 21025802 ~ 21026070 (+)
LOC111192878 NA non-coding upstream 418868 20957703 ~ 20958378 (+)
G65634 NA non-coding downstream 992 21378768 ~ 21384389 (+)
G65637 NA non-coding downstream 27859 21405635 ~ 21405844 (+)
G65638 NA non-coding downstream 44029 21421805 ~ 21427765 (+)
G65646 NA non-coding downstream 77982 21455758 ~ 21498546 (+)
G65651 NA non-coding downstream 94781 21472557 ~ 21480045 (+)
G65575 nav3 other upstream 352672 21024175 ~ 21024574 (+)
G65565 NA other upstream 419611 20957135 ~ 20957635 (+)
LOC103037311 LOC103037311,LOC103358095,LOC106514816,LOC107386321 other upstream 1582921 19780663 ~ 19794325 (+)
alyref alyref,LOC107743018,LOC107665635,LOC107748861 other upstream 2036367 19280292 ~ 19340879 (+)
LOC103044219 mcrip1,fam195b,LOC107654575 other upstream 2097729 19276802 ~ 19279517 (+)
agbl5 NA other downstream 62633 21440409 ~ 21549162 (+)
gen1 gen1 other downstream 252011 21629787 ~ 21715437 (+)
ccdc167 NA other downstream 1561779 22939555 ~ 22949199 (+)
c7h11orf98 cunh11orf98,c19h11orf98 other downstream 1621594 22999370 ~ 23003468 (+)
crebl2 crebl2,LOC107707978 other downstream 1753304 23131080 ~ 23138011 (+)

Expression


Co-expression Network