G65646


Basic Information

Item Value
gene id G65646
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 21455758 ~ 21498546 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU88621
tatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatcgtggGAGATGGCTTTATGCCTCACTTATGTACAGCCCAGTGTGTTATTGTTTGTTGTAATGTTTACATGTTTGTAAAACCTTAGCAGCGAGGTCGTCAGTTGTACATGGTTAAAACCCTTCGCTACGTAGAATGCCCCCTTGCTCTGAAGCAATTGATGTTGTCATAAAGCTCCATTAGCActttgttagcattagcatctggTGCTGTGTAAATAGCAATGATGAACACCACAGATGCATGAATCTGAACCCATACCAAAAAGGAGCAGTAACAGCATACAAGAAACTAATTTAAATGCCAAGGATGTATCCAAATttcaaaattaataaacagctcaagaaaaataaagagaacacCTAAACAACAGAATGTAACTCCAAGTCAACCACACTTCTGTGACACAACCTGTCCAGTTAGGAAGCAACATTGATTGTGAATCagtttcacctgctgttgtgcaaatagaACAGACAACAGATAGAAATGagaggcaattagcaagacaaccCCTATAAAATGATTGTTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU88621 True 604 lncRNA 0.37 2 21455758 21498546

Neighbor

gene id symbol gene type direction distance location
tmem214 tmem214,LOC104961504,LOC106608390 coding upstream 17548 21410849 ~ 21438210 (+)
LOC111192985 LOC107688027,LOC107751101,LOC107731862,LOC106606817,LOC106579815,LOC107570926 coding upstream 860457 20593666 ~ 20595301 (+)
pawr LOC108434155,LOC108434154 coding upstream 958097 20417512 ~ 20497661 (+)
ppp1r12a ppp1r12a coding upstream 1057791 20299702 ~ 20397967 (+)
rps16 rps16,LOC103382554 coding upstream 1189561 20262580 ~ 20266197 (+)
msgn1 NA coding downstream 216906 21715452 ~ 21716948 (+)
tmem19 tmem19,LOC107719866,LOC107687559 coding downstream 406713 21905259 ~ 21911577 (+)
rab21 rab21,zgc:154045,LOC106609839,LOC107687573,LOC107690748 coding downstream 434223 21932769 ~ 21956278 (+)
ptprr ptprr coding downstream 495564 21994110 ~ 22100636 (+)
LOC103042836 NA coding downstream 606294 22104840 ~ 22161850 (+)
G65638 NA non-coding upstream 27993 21421805 ~ 21427765 (+)
G65637 NA non-coding upstream 49914 21405635 ~ 21405844 (+)
G65634 NA non-coding upstream 71369 21378768 ~ 21384389 (+)
G65633 NA non-coding upstream 77982 21377246 ~ 21377776 (+)
G65630 NA non-coding upstream 83637 21371050 ~ 21372121 (+)
G65640 NA non-coding downstream 52159 21550705 ~ 21552600 (+)
G65672 NA non-coding downstream 69521 21568067 ~ 21569190 (+)
G65676 NA non-coding downstream 75505 21574051 ~ 21574272 (+)
G65744 NA non-coding downstream 89646 21588192 ~ 21588864 (+)
G65752 NA non-coding downstream 100943 21599489 ~ 21599843 (+)
G65575 nav3 other upstream 431184 21024175 ~ 21024574 (+)
G65565 NA other upstream 498123 20957135 ~ 20957635 (+)
LOC103037311 LOC103037311,LOC103358095,LOC106514816,LOC107386321 other upstream 1661433 19780663 ~ 19794325 (+)
alyref alyref,LOC107743018,LOC107665635,LOC107748861 other upstream 2114879 19280292 ~ 19340879 (+)
LOC103044219 mcrip1,fam195b,LOC107654575 other upstream 2176241 19276802 ~ 19279517 (+)
gen1 gen1 other downstream 131241 21629787 ~ 21715437 (+)
ccdc167 NA other downstream 1441009 22939555 ~ 22949199 (+)
c7h11orf98 cunh11orf98,c19h11orf98 other downstream 1500824 22999370 ~ 23003468 (+)
crebl2 crebl2,LOC107707978 other downstream 1632534 23131080 ~ 23138011 (+)
eps8 eps8 other downstream 1723968 23222514 ~ 23323361 (+)

Expression


Co-expression Network